Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1279 ATGGAAGCTGGAAATGACCAACTTCAGTATCACCAAAACCATCGCTCAACAACTTCTTTTCCTCTCCAATTGTTAGAGAAGAAGGAATATGATAATAATCCCCAACCTCCCCTTGACATCATCTCTAAGAAGCCCTCTCCCAAGAGAACTTCTACTAAGGACCGCCACACCAAAGTGGACGGCCGCGGTCGTCGCACCCGAATGCCTGCTCTTTGTGCTGCTAGAGTTTTCCAGCTCACTCGTGAGCTCGGCCACAAGTCCGATGGCGAAACCATTGAATGGCTTCTTCAACAGGCGGAGCCTGCCGTTATCGCCGCCACCGGGACCGGTACTATTCCTGCAAACTTTAACTCTCTCAACACGTCGTTGAGAAGATCGGCCACAAGCATTTCTTTGCCATCTCAACTAAGATCCTCATCTTACTACCACCCCGGAGTGATGGGGTTCAACTCTGAAGCAATAACTAATAATATGACGCAACCAAAAGAAGATCATCACTATCTACACCAATCCACCACGGGCCTAATCCCCACTACGATTCCGGCCAACTTTTGGATGCTTTCCGACGCCAACAACCAATTACTCGGCGGCGGAGGCGACTCTCTATGGAGGGTTCAGTCGGCCAACAACCAAGACGCCGCTTTATATAGATTAGGACAACCCTCCGGTGGTAATAATTTACGTTTATCCAATAATCTGGCTGCTCCATTGACGCTCCTCCCTGGAAAGCCACTCTCTTTGGGACCCACTGCCGGAGGTGGACGTGGAACCATGAATGATGACGGACACTTGAATATCTACGCCGCCCAAGATCCGCCGCATGGGGCGGCTCCCGACACCGGCGTCTCCTAA 852 51.06 MEAGNDQLQYHQNHRSTTSFPLQLLEKKEYDNNPQPPLDIISKKPSPKRTSTKDRHTKVDGRGRRTRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFNSLNTSLRRSATSISLPSQLRSSSYYHPGVMGFNSEAITNNMTQPKEDHHYLHQSTTGLIPTTIPANFWMLSDANNQLLGGGGDSLWRVQSANNQDAALYRLGQPSGGNNLRLSNNLAAPLTLLPGKPLSLGPTAGGGRGTMNDDGHLNIYAAQDPPHGAAPDTGVS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27166591 27168436 + CmPI595203_04g012790.1 Cmu04g1279 414864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1279 283 MobiDBLite consensus disorder prediction 246 283 - -
Cmu04g1279 283 Pfam TCP family transcription factor 50 150 IPR017887 -
Cmu04g1279 283 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 169 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu04g1279 283 ProSiteProfiles TCP domain profile. 52 106 IPR017887 -
Cmu04g1279 283 MobiDBLite consensus disorder prediction 46 62 - -
Cmu04g1279 283 MobiDBLite consensus disorder prediction 1 23 - -
Cmu04g1279 283 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1279 Cmu-Chr4:27166591 Cmu11g1349 Cmu-Chr11:25694987 4.50E-34 dispersed
Cmu05g1438 Cmu-Chr5:19232415 Cmu04g1279 Cmu-Chr4:27166591 1.60E-29 transposed
Cmu04g1279 Cmu-Chr4:27166591 Cmu05g2494 Cmu-Chr5:33792540 4.80E-44 wgd
Cmu04g1279 Cmu-Chr4:27166591 Cmu06g1677 Cmu-Chr6:27850054 7.60E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6054 PF03634 TCP 7.80E-36 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1279 - - - 0.0