Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1292 ATGACGGTCACCACCACCCAACAACTCTTTGTTGTGTCTCTCATTTCTCTCACTCTCCTCACCACCGCAATTTTGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTAGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTGTGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTTTGATGGTGTTCAAAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCCGATTCCAAGATCATTTCACTTGGACACGTAGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACCGTCGTCTATAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGCTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA 1152 48.87 MTVTTTQQLFVVSLISLTLLTTAILYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGRVMGPDSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27249964 27251367 - CmPI595203_04g012920.1 Cmu04g1292 414877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1292 383 Gene3D - 34 376 IPR012334 -
Cmu04g1292 383 PRINTS Pollen allergen Amb family signature 119 135 IPR018082 -
Cmu04g1292 383 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Cmu04g1292 383 PRINTS Pollen allergen Amb family signature 285 304 IPR018082 -
Cmu04g1292 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Cmu04g1292 383 PRINTS Pollen allergen Amb family signature 263 282 IPR018082 -
Cmu04g1292 383 PRINTS Pollen allergen Amb family signature 183 204 IPR018082 -
Cmu04g1292 383 SMART amb_all 111 308 IPR002022 -
Cmu04g1292 383 PANTHER PECTATE LYASE 18-RELATED 32 379 IPR045032 GO:0030570(InterPro)
Cmu04g1292 383 SUPERFAMILY Pectin lyase-like 34 373 IPR011050 -
Cmu04g1292 383 Pfam Pectate lyase 124 302 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1292 Cmu-Chr4:27249964 Cmu05g0385 Cmu-Chr5:3284639 6.20E-79 dispersed
Cmu04g1292 Cmu-Chr4:27249964 Cmu05g2509 Cmu-Chr5:33950432 5.60E-64 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1292 K01728 - csv:101217103 676.781