Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g1292 | ATGACGGTCACCACCACCCAACAACTCTTTGTTGTGTCTCTCATTTCTCTCACTCTCCTCACCACCGCAATTTTGTATTCAGAAGCCCATGGCTTGAACATGAACGCCATTGACAGATGCTGGAGATCCAACCCATACTGGAGAAGAAACAGGCAACAACTAGCCGTTTGCTCGGTTGGTTTCGCTGGAAAAATGACCAACAACATGGGAAGAAATCTCATACGCTACCAAGTCACGGACCCTAGCGACGACCCTATAAACCCACGCCCAGGTACGCTCAGATACGGCGCCACAATGATCAAACCCAAAGTCTGGATCACATTCCCAAAAGATATGCATATTGTGCTCAAGAAGCCGCTTCTCATTAGCAGCTTCACCGCCATCGACGGCCGAGGCGCCACCGTCCACATCACCGGGAATGCGTGTTTGATGGTGTTCAAAGCCACCAACATCATAATCCACGGCCTTATCATCCACCACTGCAGGGCTCAGGCGGCGGGTCGAGTCATGGGCCCCGATTCCAAGATCATTTCACTTGGACACGTAGACGGTGATGCCATTCGTTTAGTAACTGCCTCCAAAGTGTGGATTGACCACAACACGCTGTACCGTTGCGAGGATGGGTTGCTTGACGTCACCCGTGGGTCCACTGACATCACCATTTCCAACAATTGGTTCCGAGATCAAGACAAGGTTATTCTTCTTGGCCACGATGACGGTTATGTCCGAGATCGGAACATGAGAGTCACCGTCGTCTATAACCATTTTGGACCCAATTGCAACCAAAGAATGCCAAGGATTCGATATGGGTATGCACACGTGGCGAACAATTTGTACCAAGGTTGGACGCAATACGCAATTGGAGGGAGCATGAATCCAAGCGTCAAGAGTGAAGCCAACCTTTTCATCGCATCAAAGTCAAAACAAATTATATGGAGCACAGGGAAAGTAGAGGAGACGAAATGGAAGTTTCATTCAGTAAGAGACGTATTTGAAAACGGAGCTTTATTCGCGCAAATCGGTAAGGGAAGAGGAGGTGTAAAGCCAAATTACAACGCCCAACAACGCTTTCCGGTTGCAGATGCCAAGTGGCTTAGATCATTAACAGGCTCCTCCGGGGCATTGCGTTGCTCATCAAACTCAAAATGTTGA | 1152 | 48.87 | MTVTTTQQLFVVSLISLTLLTTAILYSEAHGLNMNAIDRCWRSNPYWRRNRQQLAVCSVGFAGKMTNNMGRNLIRYQVTDPSDDPINPRPGTLRYGATMIKPKVWITFPKDMHIVLKKPLLISSFTAIDGRGATVHITGNACLMVFKATNIIIHGLIIHHCRAQAAGRVMGPDSKIISLGHVDGDAIRLVTASKVWIDHNTLYRCEDGLLDVTRGSTDITISNNWFRDQDKVILLGHDDGYVRDRNMRVTVVYNHFGPNCNQRMPRIRYGYAHVANNLYQGWTQYAIGGSMNPSVKSEANLFIASKSKQIIWSTGKVEETKWKFHSVRDVFENGALFAQIGKGRGGVKPNYNAQQRFPVADAKWLRSLTGSSGALRCSSNSKC | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27249964 | 27251367 | - | CmPI595203_04g012920.1 | Cmu04g1292 | 414877 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g1292 | 383 | Gene3D | - | 34 | 376 | IPR012334 | - | |
Cmu04g1292 | 383 | PRINTS | Pollen allergen Amb family signature | 119 | 135 | IPR018082 | - | |
Cmu04g1292 | 383 | PRINTS | Pollen allergen Amb family signature | 57 | 74 | IPR018082 | - | |
Cmu04g1292 | 383 | PRINTS | Pollen allergen Amb family signature | 285 | 304 | IPR018082 | - | |
Cmu04g1292 | 383 | PRINTS | Pollen allergen Amb family signature | 354 | 377 | IPR018082 | - | |
Cmu04g1292 | 383 | PRINTS | Pollen allergen Amb family signature | 263 | 282 | IPR018082 | - | |
Cmu04g1292 | 383 | PRINTS | Pollen allergen Amb family signature | 183 | 204 | IPR018082 | - | |
Cmu04g1292 | 383 | SMART | amb_all | 111 | 308 | IPR002022 | - | |
Cmu04g1292 | 383 | PANTHER | PECTATE LYASE 18-RELATED | 32 | 379 | IPR045032 | GO:0030570(InterPro) | |
Cmu04g1292 | 383 | SUPERFAMILY | Pectin lyase-like | 34 | 373 | IPR011050 | - | |
Cmu04g1292 | 383 | Pfam | Pectate lyase | 124 | 302 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g1292 | Cmu-Chr4:27249964 | Cmu05g0385 | Cmu-Chr5:3284639 | 6.20E-79 | dispersed | |
Cmu04g1292 | Cmu-Chr4:27249964 | Cmu05g2509 | Cmu-Chr5:33950432 | 5.60E-64 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g1292 | K01728 | - | csv:101217103 | 676.781 |