Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1293 ATGCGGGAACTTGGACAGGAAAATGGAGAGAAACGGGCGCAGGGGATAGTGGCGTGGTGGTATGAAGAGTGGTCGGGGCGGAAGGCCAATCACGTGAACTTCAGCCACTACCCGGTTTGGCCTCTGCGCTATTTTATCTTTTATTTTGCTGCAGATTCTCAACTCGGTTCAGCTCTCCATTTTCTTGTAGTGATCATGGGGAGGAAGAAGAGGACCGATGCTGGTGGTGAAAGTTCCGAGTCTCAAGATGGTGGTGGTCGTGGCTCTCAACGATCAGCTGAAAGGAGAGACGGCCCACAGCAACATGGTGGGAGTGGGTACCAGGGTGGTAGAGGTTGGGGTTCTCAAGGGGGACGTGGAGGCCAAGGCAGTGGTGGTCGTGGCCGAGGAACGTCACAACATCAGCACTATGGAGGACCTCCTGATTACCAAGGCAGGGGTAGAGGTGGAGGTGGGCCATATCAGCATGTAGCACGCAGTAACTATGGTGGTGGTAATCGTGGAGGCATGGGTGGTGGTGGCATTGGGGGAGGACCTTCTTCTGGTGGACCATCCAGGCCACCAGTTCCCGAGCTGCACCAAGCAACCTCAGTGTATCAAGGAGGGATGACTCAGCCAGCCTCCTCTGTGGCGAGTTCTTCCTCCCACCCATCTTCTGATACTTCATCAATTGATCAACAATTTCAACAGGTTTCCATCCAACAGGAATCTTCTCAAAGCCAAGCAATTCAACCTGCACCGTCTAGTAAATCCATGAGATTCCCTCTGAGACCAGGCAAGGGTAGCTCTGGCATAAGGTGTATCGTTAAAGCTAACCACTTCTTTGCCGAGTTACCAGACAAAGATCTTCATCAGTATGATGTTACCATTACCCCAGAAGTCACTTCGCGGGTCTACAATCGAGCTGTAATGGAACAACTAGTGAAATTATATAGGGTCTCGCACCTTGGGGATCGGCTTCCTGCTTATGATGGAAGAAAAAGTTTATATACGGCTGGTCCCCTCCCTTTCATATCTAATGAGTTTAGAATAACTCTTTTTGATGAAGAAGATGGATCCGGAGGACAAAGACGGGAGAAAGAATTTAAAGTTGTGATCAAGTTTGCTGCTCGTGCTGATCTGCACCATCTTGGACTCTTTTTGCAAGGCAGACAGGCTGATGCCCCTCAAGAAGCCCTTCAAGTTCTGGATATTGTATTACGTGAACTGCCTACTTCAAGGTATTGTCCAGTGGCCCGATCATTTTACTCTCCAGACCTTGGCAGACGTCAGACACTGGGTGAAGGGTTGGAAAGTTGGCGTGGCTTTTATCAGAGTATCCGCCCTACTCAAATGGGGCTCTCCCTTAATATTGATATGTCATCTACTGCTTTCATAGAGCCTTTGCCTGTCATTGATTTTGTGACTCAACTTCTTAATCGTGATGTGTCGTCCAGACCATTATCTGATGCTGATCGTGTGAAGATAAAAAAGGCTCTCCGAGGTGTCAAGGTTGAAGTGACACACCGTGGGAATATGCGCAGAAAATATCGCATTTCTGGTTTGACATCACAAGCAACAAGGGAGCTAACTTTCCCAGTTGATGAAAGAGGTACTATGAAGTCGGTGGTTGAGTACTTCTATGAAACATATGGGTTTGTTATCCAACATACCCAGTGGCCTTGTCTTCAAGTAGGGAATCAGCAGAGACCTAACTATCTACCCATGGAAGTATGTAAGATTGTTGAAGGCCAGAGGTATTCCAAAAGGCTCAATGAAAGACAAATAACTGCTCTGCTCAAGGTTACATGCCAACGGCCAAAAGATAGAGAAGAAGATATTATGCAGACGGTACGTCATAATGCATATCAAAATGATCCATATGCAAAGGAGTTTGGAATTAAGATAAGTGAGAAGCTTGCTTCTGTTGAAGCTCGTATTCTTCCAGCACCATGGCTAAAATATCATGACACCGGCAGAGAAAAAGATTGTTTGCCACAAGTTGGACAGTGGAATATGATGAATAAGAAAATGTTCAATGGTGGTACTGTTAACAACTGGATGTGCATTAATTTCTCTCGCTATGTGCAAGACAGTGTTACTCGTGGGTTTTGTTATGAACTTGCTCAAATGTGTTACATTTCTGGCATGGCTTTCAATCCAGAACCAGTGCTTCCTCCTATTTTTGCTCGTCCTGATCATGTGGAAAAGGCCCTTAAAACTCGGTACCATGATGCAATGAGCATTCTCCAACCCCAGGGCAAGGAGCTTGATCTGCTTATTGTTGTATTGCCAGATAACAACGGATCTCTTTATGGTGATTTAAAACGTATCTGTGAAACAGATCTCGGCCTTGTTTCCCAGTGCTGTTTGACTAAACATGTCTTCAAAATGAGCAAACAGTACTTGGCCAATGTGGCCTTGAAAATAAACGTTAAGGTTGGGGGAAGGAATACAGTACTTGTTGATGCGTTATCTAGGCGTATACCTTTGGTTAGTGACCGGCCTACCATTATATTTGGTGCTGATGTAACTCATCCTCACCCAGGAGAAGACTCAAGTCCATCCATTGCAGCTGTTGTGGCTTCTCAAGATTGGCCAGAAGTTACAAAATATGCTGGTTTGGTTAGTGCTCAAGCCCACAGGCAAGAGCTTATTCAAGATCTTTTCAAAACATGGCAGGATCCTGTTAGAGGGACAGTAACGGGTGGAATGATCAAGGAACTCCTCATCTCCTTCCGTAGAGCAACTGGACAGAAACCTCAACGAATTATATTTTACAGGGATGGGGTTAGCGAAGGACAGTTCTACCAAGTTTTGTTGCATGAGCTGGATGCGATTAGAAAGGCATGTGCTTCTTTGGAACCAAACTACCAACCACCTGTGACATTCGTTGTGGTACAGAAGCGTCATCACACTAGATTGTTTGCTAACAACCATTCTGATCGCCATGCAGTAGACAAGAGTGGGAACATATTACCTGGTACGGTTGTTGACTCCAAAATTTGTCACCCTACGGAATTTGACTTTTACCTGTGCAGTCATGCTGGAATCCAGGGTACAAGTCGTCCTGCTCATTACCATGTTCTGTGGGATGAGAACAAGTTCACAGCTGATGGATTGCAGACTCTAACGAATAATCTTTGTTATACGTATGCAAGGTGTACTCGCTCTGTTTCCATTGTGCCCCCAGCGTACTACGCTCATCTTGCTGCATTTCGAGCTCGTTTTTATATGGAACCTGAAACCTCCGATAGTGGGTCAATTAGCAGTGAGGCTGCTGCTGGACGTGGTGGCGTTGGTGCTCGCAGTACACGGGCACCGGGGTTGAATGCTGCTGTTCGACCTTTGCCAGCTCTGAAAGAGAATGTTAAGAGGGTTATGTTCTACTGTTGA 3375 46.19 MRELGQENGEKRAQGIVAWWYEEWSGRKANHVNFSHYPVWPLRYFIFYFAADSQLGSALHFLVVIMGRKKRTDAGGESSESQDGGGRGSQRSAERRDGPQQHGGSGYQGGRGWGSQGGRGGQGSGGRGRGTSQHQHYGGPPDYQGRGRGGGGPYQHVARSNYGGGNRGGMGGGGIGGGPSSGGPSRPPVPELHQATSVYQGGMTQPASSVASSSSHPSSDTSSIDQQFQQVSIQQESSQSQAIQPAPSSKSMRFPLRPGKGSSGIRCIVKANHFFAELPDKDLHQYDVTITPEVTSRVYNRAVMEQLVKLYRVSHLGDRLPAYDGRKSLYTAGPLPFISNEFRITLFDEEDGSGGQRREKEFKVVIKFAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPTSRYCPVARSFYSPDLGRRQTLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSSRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPKDREEDIMQTVRHNAYQNDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMFNGGTVNNWMCINFSRYVQDSVTRGFCYELAQMCYISGMAFNPEPVLPPIFARPDHVEKALKTRYHDAMSILQPQGKELDLLIVVLPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVTKYAGLVSAQAHRQELIQDLFKTWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLHELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFANNHSDRHAVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENKFTADGLQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSISSEAAAGRGGVGARSTRAPGLNAAVRPLPALKENVKRVMFYC 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27258275 27265781 + CmPI595203_04g012930.1 Cmu04g1293 414878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1293 1124 CDD PAZ_argonaute_like 461 575 - -
Cmu04g1293 1124 SMART PAZ_2_a_3 466 598 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu04g1293 1124 Gene3D - 640 815 - -
Cmu04g1293 1124 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 255 1079 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Cmu04g1293 1124 SUPERFAMILY Ribonuclease H-like 747 1073 IPR012337 -
Cmu04g1293 1124 MobiDBLite consensus disorder prediction 1077 1097 - -
Cmu04g1293 1124 Gene3D - 821 1124 IPR036397 GO:0003676(InterPro)
Cmu04g1293 1124 SMART DUF1785_2 409 461 IPR014811 -
Cmu04g1293 1124 CDD Piwi_ago-like 620 1072 IPR045246 -
Cmu04g1293 1124 ProSiteProfiles PAZ domain profile. 463 576 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu04g1293 1124 Pfam N-terminal domain of argonaute 267 400 IPR032474 -
Cmu04g1293 1124 Gene3D paz domain 455 580 - -
Cmu04g1293 1124 FunFam Argonaute 10 640 815 - -
Cmu04g1293 1124 MobiDBLite consensus disorder prediction 197 248 - -
Cmu04g1293 1124 Pfam Glycine-rich region of argonaut 138 248 IPR024357 -
Cmu04g1293 1124 Pfam PAZ domain 465 592 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cmu04g1293 1124 ProSiteProfiles Piwi domain profile. 752 1073 IPR003165 GO:0003676(InterPro)
Cmu04g1293 1124 SUPERFAMILY PAZ domain 269 618 IPR036085 GO:0005515(InterPro)
Cmu04g1293 1124 FunFam protein argonaute 10-like 821 1124 - -
Cmu04g1293 1124 Pfam Mid domain of argonaute 659 734 IPR032473 -
Cmu04g1293 1124 SMART Piwi_a_2 752 1073 IPR003165 GO:0003676(InterPro)
Cmu04g1293 1124 MobiDBLite consensus disorder prediction 72 258 - -
Cmu04g1293 1124 FunFam Protein argonaute-2 455 581 - -
Cmu04g1293 1124 Pfam Piwi domain 753 1072 IPR003165 GO:0003676(InterPro)
Cmu04g1293 1124 Pfam Argonaute linker 2 domain 602 648 IPR032472 -
Cmu04g1293 1124 Pfam Argonaute linker 1 domain 411 460 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1363 Cmu-Chr1:27102881 Cmu04g1293 Cmu-Chr4:27258275 7.90E-300 dispersed
Cmu04g1293 Cmu-Chr4:27258275 Cmu05g0521 Cmu-Chr5:4438214 0.00E+00 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1293 K11593 - csv:101212130 1868.2