Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1306 ATGCCGATGGCTGGGAGAGCGAGTACGATCAATGAGCGTCAATTACACAAACACTGTGGACGATACGAAGGAACACTGACGGAAGGCTCCTTTGTTGGGTGGACAATAAAAAAAGCTGGCGAAGGTTCAAAGTCTTCGCAGTCGCTGCGTTGCCTTGGCGTCCGCCTCTCTCTCACTCTCAGGTCTAGATACTTAGGCATGGCTGCTTTTGAAAAAGACGATATACCAATGCTATCAAACACCGATCCACCAATGTTTGATGAGCAAGTGGATTCTTATTTTCCTTCATATGCATCCTTGGGCCGGAGTTCATCACTATCAATTCCAGCAACTTCTTCTGGCATGTATGGTAGTGAAGCAATTCTTGTTGGTCATACTGGTCCCCTACGAATTGAAAGAAGTTCATTCATGGTGAGTGGTTCAAAATATACCGGCAGTAAGCCTGAAAAACTTTCACAGTCAAAGCCAGGAGTGACTGAAAGCAAAACGGCAGAGCTGTTGGCAGAAAAAATCCCTTCCTTCAAGGCGACAGATGAGTCTGATTGGTCCATTCATAACTATGCTGGTAGAAATGAACACTTAATAAGGTCTGGCCAGCTGGGATTGTGCAATGATCCTTTCTGTATTACTTGCCCAACATATAATTTCAAAGCATCACAACAGAAAAGCTCAAGAATTTCAGGCATATTTGACGCCAAGTTTCATAACGATCTCTATGGAGGAGGGAAAGGTTGGGCGGGAAGCTTTCAGTCATTCTGGTGCTTCTTGCTTCCATATATTCCAGGAGTAATGAATCCTCATGCAAAAGTTGTTCAGCAGTGGAACAAGTTTTTTGTCATTTCTTGCTTAGTGGCAATCTTCTTGGACCCATTATTTTTCTTCTTGCTGTCTGTCCAATATAAGAATAAGTGCATCGTTATTGATTGGTCTTTGACCACAGCATTGGTGGTTTTCCGGAGCCTGACTGACTTTATCTATTTCCTACACATGCTTCTTCAGTTTAGGTTGGCCTACGTGGCACCAGAATCCAGAGTTGTTGGTGCTGGCGAATTGGTTGACCATCCGAAGAAAATTGCTATGAATTACATTAAAGGAAAATTTTTTGTAGATTTGCTTGTTGTTTTGCCGCTGCCTCAGATTATAGTTTTTCTAATCCTGCCAAAGTCTTTGGGGTCATCTGGAGCAAATTATGCCAAAAATCTATTACGCACTGCAGTTACTGTGCAATATATTCCCAGACTCTATAGATTTCTACCTCTTCTTGCTGGCCAGTCTCCAAGTGGCTTTGTATTTGAGACAGCATGGGCAAATTTTGTCATCAATCTTCTGACCTTTATGTTGGCTGGTCATGTTGTTGGGTCTTTCTGGTATCTCCTTGGGCTTCAGGGGGTGAATCGATGTTTTCGAGAGGCCTGCACTAACACTGGAAATGAGAGCTGCTTGGAATATATAGATTGTGGGCATGGGAATGAAGCTGGGAGTCAGATTCAGGATCCACAGCGGGATTCATGGAAAAATAATGAGAATGCTACGGCATGTTTTGCCAAAGAAGGTTTCAATTATGGAATCTATCTTCAGGCTGTAAACCTTACTACAGAAAATAATATAATCACGAGATATACTTACTCCTTATTTTGGGGATTCCAGCAAATCAGTACTCTGGCCGGGAACCAAGTTCCAAGCTATTATGTCTATGAAGTCCTTTTTACTATGGCTATTATTGGGCTTGGTCTATTGCTGTTTGCTCTTCTCATCGGGAATATGCAGAACTTTCTCCAGGCTCTTGGAAGAAGGAGGTTAGAAATGTCACTAAGACGTCGTGATGTTGAGCAATGGATGGAGCATCGTCGCTTACCAGAGAATTTAAGAAGGCAAGTACGACAGGCTGAAAGATACAATTGGGCTTCTACAAGAGGTGTAAATGAAGAGAGGATTTTCGAAAATTTGCCTGAGGACCTACAAAGAAACATAAGACGACATCTCTTTAGATTTGTTAACAAGGTTCGCATTTTTGCACTGATGGACTATGAGCCTATTTTAGACGCAATACGTGAGAGACTGCGTCAGAAGACATACATAGAAGGAAGTGAAGTTTTTTCTGCTGGAGATATCATTGAGAAGATGGTTTTCATCGTACGTGGGAAAATGGAGAGCCGTGTAGATGGAAATGGGATTGTGGTTCCCTTATCTGAAGGAGATGTCTGCGGCGAGGAACTTCTAGCATGGTGTCTTGAGCATTCCTCCATAAACAAAGATATGAAGCGGCATCAAGTTCCAGCACCGAGATTGGTCAGCAATCGGACAGTAAAATGCTTAAGTAATGTTGAAGCATTTTCTCTCCGGGTTGCAGACCTTGAAGAAGTGACTAGTATGTTTTCTAGATTCTTGCGAAATCCACGTGTTCAAGGAGCCATAAGGTACGAATCACCCTACTGGAGGTACCTAGCTGCAACGCGCATTCAAGTAGCTTGGAGATACAGGAAAAGACGTCTATCTCGAGTTCAAACATCTCAATCTGACTAA 2523 42.69 MPMAGRASTINERQLHKHCGRYEGTLTEGSFVGWTIKKAGEGSKSSQSLRCLGVRLSLTLRSRYLGMAAFEKDDIPMLSNTDPPMFDEQVDSYFPSYASLGRSSSLSIPATSSGMYGSEAILVGHTGPLRIERSSFMVSGSKYTGSKPEKLSQSKPGVTESKTAELLAEKIPSFKATDESDWSIHNYAGRNEHLIRSGQLGLCNDPFCITCPTYNFKASQQKSSRISGIFDAKFHNDLYGGGKGWAGSFQSFWCFLLPYIPGVMNPHAKVVQQWNKFFVISCLVAIFLDPLFFFLLSVQYKNKCIVIDWSLTTALVVFRSLTDFIYFLHMLLQFRLAYVAPESRVVGAGELVDHPKKIAMNYIKGKFFVDLLVVLPLPQIIVFLILPKSLGSSGANYAKNLLRTAVTVQYIPRLYRFLPLLAGQSPSGFVFETAWANFVINLLTFMLAGHVVGSFWYLLGLQGVNRCFREACTNTGNESCLEYIDCGHGNEAGSQIQDPQRDSWKNNENATACFAKEGFNYGIYLQAVNLTTENNIITRYTYSLFWGFQQISTLAGNQVPSYYVYEVLFTMAIIGLGLLLFALLIGNMQNFLQALGRRRLEMSLRRRDVEQWMEHRRLPENLRRQVRQAERYNWASTRGVNEERIFENLPEDLQRNIRRHLFRFVNKVRIFALMDYEPILDAIRERLRQKTYIEGSEVFSAGDIIEKMVFIVRGKMESRVDGNGIVVPLSEGDVCGEELLAWCLEHSSINKDMKRHQVPAPRLVSNRTVKCLSNVEAFSLRVADLEEVTSMFSRFLRNPRVQGAIRYESPYWRYLAATRIQVAWRYRKRRLSRVQTSQSD 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27345144 27364055 + CmPI595203_04g013060.1 Cmu04g1306 414891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1306 840 SUPERFAMILY Voltage-gated potassium channels 269 593 - -
Cmu04g1306 840 Gene3D - 267 595 - -
Cmu04g1306 840 Gene3D Jelly Rolls 668 794 IPR014710 -
Cmu04g1306 840 SUPERFAMILY cAMP-binding domain-like 598 796 IPR018490 -
Cmu04g1306 840 ProSiteProfiles cAMP/cGMP binding motif profile. 683 740 IPR000595 -
Cmu04g1306 840 Gene3D Helix hairpin bin 596 662 - -
Cmu04g1306 840 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 260 833 - -
Cmu04g1306 840 CDD CAP_ED 670 788 IPR000595 -
Cmu04g1306 840 Pfam Ion transport protein 276 596 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1306 Cmu-Chr4:27345144 Cmu06g1352 Cmu-Chr6:24717597 1.20E-114 dispersed
Cmu04g1306 Cmu-Chr4:27345144 Cmu01g0049 Cmu-Chr1:422307 2.60E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1306 K05391 - csv:101215903 1422.91