Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1309 ATGCAAGGCGACGCGAGGAATCAATTTCCATTTGATTTGACCTCACCTCTACAAAACAACAGTGTGGTGCCACATCATTTCTTCTCCACTCAACATCTGTCCATCACCTTCAAGTTTTCTCTCAATAATGAATGCTTCATTTCAATTACTTTTCCATTTCTTTGTGTCGTCATATTACTGCAGACCTTTGCCTCGAAGTTGTATGGATCAAAGTGTTGTGAAAACTGCCCTACATTGAGGAACGTGGTGGGACCCGAAGCCGACGTGACGTGTCCTTTGGTTGCTTCAGGGGAGGATGTAGTTAAACTTGAACTTATATTTCAACCCTTCTTTGCAGACTCTGGAGATTCTGTGAACTGCACTTTTGGTTCCAGATATCTCCGTTCTCCTCCTCCCAAGTTCAAACTAGGGGAGCAATCTATTCCAAAGGATGCAGCGTACCAGATCATACACGATGAGTTGATGCTGGATGGGACTCCCAGGCTGAACTTGGCTTCTTTTGTAACAACTTGGATGGAGCCAGAGTGTGATAACCTTATCATGGCTTCTCTCAACAAGAACTATGTTGACATGGATGAGTACCCAGTCACCACTGAGCTACAGAATCGCTGTGTCAATATGATTGCTCGCCTCTTTCATGCCCCCATCGGAGATCAAGAAGCTGCAGTTGGTGTGGGGACTGTCGGATCATCAGAGGCTATAATGCTGGCGGGTCTTGCTTTTAAGAGGAAATGGCAGCACAGAAGAAAATCTCAAGGCAAACCCTACGATAAACCCAACATAGTCACTGGTGCTAATGTCCAGGTGTGCTGGGAGAAGTTTGCAAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAGCTTTCTGAAGGGTATTATGTGATGGATCCAGTGAAGGCTGTTGAACTGGTTGATGAGAATACTATTTGTGTTGCAGCAATTTTGGGGTCAACTCTGACTGGAGAGTTTGAGGATGTAAAACTCCTTAATGAACTTCTCTCTAAGAAGAATAAGGAAACAGGTTGGGACACCCCAATTCATGTTGATGCAGCCAGTGGAGGGTTTATTGCCCCATTCCTTTATCCCGATCTCGACTGGGATTTTCGGTTGCCTTTAGTGAAGAGCATCAATGTTAGTGGTCACAAGTATGGGCTTGTCTACCCTGGTGTAGGATGGGTTGTTTGGAGGAGTAAAGAGGATCTGCCTGAGGAGCTTGTCTTCCACATTAACTATCTTGGTTCTGATCAACCCACCTTTACTCTCAACTTCTCAAAAGGTTCTAGCCAAATCATCGCTCAGTATTATCAGTTCATACGGCTTGGCTTTGAGGGATACAAAAACGTGATGGAGAACTGCAGGGAGAATGCGAGAGTGCTGAGAGAGGGAATAGAGAAGATGGGAAGGTTTGAGGTTGTTTCCAAGGATGTTGGAGTGCCCCTGGTAGCCTTCACTCTCAAAGACAGCAGCAAACACACCGTGTTCGAGATATCGGAGAACCTGAGGAGGTTTGGATGGATTGTGCCAGCTTACACGATGCCAGCGGACGCTCAGCACATAGCGGTGCTGCGCGTGGTGATTAGAGAGGACTTCAGCCGCAGTTTGGCAGAGAGACTGATCTCGGACATCAACAGAGTCTTGAAGGAAGTCGAGGCACTACCAACTCGGGTGGCTGTGAAAGCAGCAGAAGTGAAAGCTGGCGTTGAAGATGGTGTGAGAGTTACAAAGCATGTGAAGAAGAGTGAACGGGAGATTGAGGAGGAAGTAACTTCATATTGGAGACGGCTTGTGGATGGCAGGAGAACTGTTTGCTTCCTTGCTGGTGCAGTCAGTGTTTGTGACTTTGTTCGCGTCGTCAGCAACTTCTCTGCTCAAGCCTCAAGCGATTCTATTGTCACACTGAAGAATGGACGCATTAACTCTGAGGAGAAAGTGAAATCTTCAATATTAGACAAGGATGCGGTGCATCGGGTTATCAGCATTATGCTTGCATCTGATGAAGTGGGAGAAGAAAGTCCCACTACCTCTACCAGTACACATGCTCTTTGCATCATCAACGCTTTTGATATCTCCAAGTTTCGTTATGATCCCATCAAAAAGATCTTCCATCTACATACAGGAAGCTTTCCAATTCATGGGGATGCTCCTGCTAAAGCTGCTTTATATAGAGATAGGTTTCTTCTGCTTTCCCAGAGGCTCTCCCGAGATCAGCATTTCTCCAAACCCGCTTTTGACACTGGCATGTCTCATTTTGGAAGTTGTGAGATTTCTCCTATTCAATCTTTGGTGGGGCAAACAGGGAGAAAATGGGTCATGGGAGTGATCTCTCAAATGGAGGATGGCCACTTTTACTTGGAGGACCTTACTGCATCTGTGGAAATTAATTTATCTAATGCTATATCCTTTACTGGCATCTTCTATGATGTGGAAAAATCTGAACTTGTTTGA 2442 45.62 MQGDARNQFPFDLTSPLQNNSVVPHHFFSTQHLSITFKFSLNNECFISITFPFLCVVILLQTFASKLYGSKCCENCPTLRNVVGPEADVTCPLVASGEDVVKLELIFQPFFADSGDSVNCTFGSRYLRSPPPKFKLGEQSIPKDAAYQIIHDELMLDGTPRLNLASFVTTWMEPECDNLIMASLNKNYVDMDEYPVTTELQNRCVNMIARLFHAPIGDQEAAVGVGTVGSSEAIMLAGLAFKRKWQHRRKSQGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLSEGYYVMDPVKAVELVDENTICVAAILGSTLTGEFEDVKLLNELLSKKNKETGWDTPIHVDAASGGFIAPFLYPDLDWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKEDLPEELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCRENARVLREGIEKMGRFEVVSKDVGVPLVAFTLKDSSKHTVFEISENLRRFGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLISDINRVLKEVEALPTRVAVKAAEVKAGVEDGVRVTKHVKKSEREIEEEVTSYWRRLVDGRRTVCFLAGAVSVCDFVRVVSNFSAQASSDSIVTLKNGRINSEEKVKSSILDKDAVHRVISIMLASDEVGEESPTTSTSTHALCIINAFDISKFRYDPIKKIFHLHTGSFPIHGDAPAKAALYRDRFLLLSQRLSRDQHFSKPAFDTGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFYLEDLTASVEINLSNAISFTGIFYDVEKSELV 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27389899 27396956 + CmPI595203_04g013090.1 Cmu04g1309 414894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1309 813 FunFam Glutamate decarboxylase 465 552 - -
Cmu04g1309 813 Gene3D - 465 552 - -
Cmu04g1309 813 FunFam Glutamate decarboxylase 170 464 - -
Cmu04g1309 813 PANTHER GLUTAMATE DECARBOXYLASE 117 597 IPR010107 GO:0004351(InterPro)|GO:0004351(PANTHER)|GO:0005829(PANTHER)|GO:0006536(InterPro)|GO:0006538(PANTHER)|GO:0030170(InterPro)
Cmu04g1309 813 Gene3D - 170 464 IPR015421 -
Cmu04g1309 813 FunFam Glutamate decarboxylase 112 169 - -
Cmu04g1309 813 Pfam Pyridoxal-dependent decarboxylase conserved domain 141 485 IPR002129 GO:0016830(InterPro)|GO:0019752(InterPro)|GO:0030170(InterPro)
Cmu04g1309 813 NCBIfam glutamate decarboxylase 121 548 IPR010107 GO:0004351(InterPro)|GO:0006536(InterPro)|GO:0030170(InterPro)
Cmu04g1309 813 CDD DOPA_deC_like 163 543 - -
Cmu04g1309 813 Gene3D - 109 169 - -
Cmu04g1309 813 SUPERFAMILY PLP-dependent transferases 118 549 IPR015424 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0829 Cmu-Chr1:9793026 Cmu04g1309 Cmu-Chr4:27389899 3.60E-228 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1309 K01580 - csv:101210903 937.947