Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1315 ATGATAGGCAATACGGCCACCTCGGCCTCCCCAGTTCTTCCTTCCTCGGAACCTTACTCTTGCTTAGAAAATGGAAACAACAACAACAACAGCAAGAGGAAAAGAAGGCCTGCAGGCACCCCAGATCCGGATGCAGAGGTGGTGTCTCTATCCCCAAAAACACTTCTAGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGCGACGGCATAAGGTCCCTTGGAAGCTGCTGAAGAGGGAGACTCCTGTTGTGCGGAAGAGGGTTTTCGTATGCCCGGAACCCACCTGCCTGCACCACGACCCTTGCCACGCCCTCGGCGACCTCGTTGGCATCAAGAAGCACTTCCGAAGGAAGCACAGCAACCACAAACAGTGGGTTTGTGAAAAATGCTCCAAGGGCTACGCCGTTCAGTCCGATTACAAGGCCCATCTCAAAACCTGCGGCACTCGAGGCCACTCTTGCGATTGCGGCCGCGTTTTCTCCCGGGTGGAAAGCTTTATAGAACACCAAGATGCTTGCAATATGGGGCATCTCCGACAAGAATCCCAAACCATTCAGCCCGCCGCATGTTTGTCCAGAACGGCTTCGAGCCCAAGCCCATCCAGCGACACTAACTTCAGCAGCGCCGCTCCCAATAATTGGCCTGCTCTCGTAGCGCCACCCACATTAAAGCCCGTGGATGCCATCTTCTTAGTCCCCACGGACGACTCCAACAACAACACTAATAACGATCACAATTTAGACCTCAAACTATCAACTGCATCAAATGGCGTGGAAGGGCGGAGCAATAATAAAGGCTCTTCAACGAAACTCCAGCTCTCCATCGGGTCGTTTGATTTTGGAGACAAGAAAAAGATGTTGAAATTGGATGATGAGAAGAAAGGTGGGTTCCGGGGCGGGGCTGGGGATGTTAGAGAAGAAGCTCGGGAGGAGCTAAGGGTGGCAATGGCGGAGAAGGCGTATGCGGAGGAAGCAAGGCAACAGGCGAAGCGGCAAATAGAAATGGCAGAGGAAGAATTCGGGAATGCAAAGAGGATGAGGCAACAGGCCCAGGCGGAGTTAGATAAGGCCACAGCTCTTAAACAAGCAGCAATCAAACAGATAAACTCAACCATTCTTGAGATCACTTGTCAAGCTTGCCAGAAGCAGTTTCAAGCCAAAGCTAAACCAACAACGACGACGACAACGACAACGAGTGCAGCCACGGATCATGACAATTATTCTGTAGCATTCAGTTACGTCTCCTCCGTCATTACAACCGAAGGTGAAGTAGAGAAAGATCAATCAACCATTATACCTAAACCACCCAACAATTAA 1356 51.33 MIGNTATSASPVLPSSEPYSCLENGNNNNNSKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGHLRQESQTIQPAACLSRTASSPSPSSDTNFSSAAPNNWPALVAPPTLKPVDAIFLVPTDDSNNNTNNDHNLDLKLSTASNGVEGRSNNKGSSTKLQLSIGSFDFGDKKKMLKLDDEKKGGFRGGAGDVREEAREELRVAMAEKAYAEEARQQAKRQIEMAEEEFGNAKRMRQQAQAELDKATALKQAAIKQINSTILEITCQACQKQFQAKAKPTTTTTTTTSAATDHDNYSVAFSYVSSVITTEGEVEKDQSTIIPKPPNN 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27452547 27454541 + CmPI595203_04g013150.1 Cmu04g1315 414900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1315 451 FunFam protein indeterminate-domain 12-like 40 108 - -
Cmu04g1315 451 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cmu04g1315 451 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 98 132 - -
Cmu04g1315 451 Gene3D Classic Zinc Finger 39 101 - -
Cmu04g1315 451 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 389 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu04g1315 451 Gene3D Classic Zinc Finger 117 187 - -
Cmu04g1315 451 MobiDBLite consensus disorder prediction 1 48 - -
Cmu04g1315 451 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cmu04g1315 451 MobiDBLite consensus disorder prediction 1 34 - -
Cmu04g1315 451 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cmu04g1315 451 MobiDBLite consensus disorder prediction 202 221 - -
Cmu04g1315 451 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 137 161 - -
Cmu04g1315 451 Coils Coil 318 380 - -
Cmu04g1315 451 SUPERFAMILY beta-beta-alpha zinc fingers 58 84 IPR036236 -
Cmu04g1315 451 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 165 199 - -
Cmu04g1315 451 SMART c2h2final6 102 132 IPR013087 -
Cmu04g1315 451 SMART c2h2final6 138 165 IPR013087 -
Cmu04g1315 451 SMART c2h2final6 61 83 IPR013087 -
Cmu04g1315 451 CDD ATP-synt_Fo_b 314 395 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0658 Cmu-Chr1:7441831 Cmu04g1315 Cmu-Chr4:27452547 8.40E-92 dispersed
Cmu04g1077 Cmu-Chr4:25352290 Cmu04g1315 Cmu-Chr4:27452547 1.00E-110 dispersed
Cmu04g1315 Cmu-Chr4:27452547 Cmu08g1461 Cmu-Chr8:26654586 4.90E-59 dispersed
Cmu04g1315 Cmu-Chr4:27452547 Cmu01g1872 Cmu-Chr1:32295810 2.90E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6061 PF00096 zf-C2H2 0.0043 CL0361 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1315 K25871 - csv:101209426 743.421