Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu04g1323 ATGAAGTATCGTTATGCGATGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGCGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGATTGAACGTACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAACAGAGAAGAAAACTGCTCAACCTATCCAAGAGAGGTAGACTAACTTTGTTGAATGCTACATTATCCAACCTCCCCATCTACTATCTCTCTCCGTTTCAAGTTCCATCTGATGTGATTGAACAAATTGAAAGGAGTTTCAGGAATTTTGTTTGGGACGGAAACCGGGTCAGAAAAACAGCTTACCTCTTTCACTGGGACATTAGATTTCAAAACAAAGTCTTCAATGTCACTCTGAGCGAGCTGTGTGTCTATCTCTATGCTAGGGCCTGCACCGATTCTGAACACTTCCTCCATACCGCAGTTAACACTAGGAACGCGGTTCCTATGGTATTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAGTCCGATTCTTCCAGCCCTGATGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCACCCATCAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATCCCAGCAGCAGCAGCTTCAGAGGTACCGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCAAGCTCCATTGCCGATCGAGACGCCCTCGAAGTCTGACCCAATTTCCGGCTTCAACTTGGGGCCGAAGGCCAAGAAGTCGGCCGATGTGAAAGACGTGGCGTCATCGGTTTCACCTATTCTGGCATCATCCCTTGGGCTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTCTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCTAGCAATCTTTCCAGGAATTGCGGCGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTAGTGGGGGGAAGAGAGAGGCGGCGAGTCAGAAAAGATTGGGTTTTCAGGAAAATGTTAAAAGCTATATTCGCGATGCTAGCAATTCCGACAATATGCCAATTGGTAATGCACCATCTACTGAGCGGAGTCCAAATTTGTTAGGACAGCCTCGAGTACAGAATGTCGCTTCATCCAATGAAGCTGGATGCTATGAATCATCATGGGGATGTTCTGACGGATTAAGAAATTTAGATTTCTGTACACCAGAGTCCTCTTATGATTGTGAAAATCCCAAGGAGTCTGAATCTCCGCGCTTTCAAGCTATACTGCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCCGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGCGTACGACCTTTCCCACTTTGGAAGTCACGCCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAAAAAAATGCCGATGCTCATCCAGAGTGGCAAGAGACAATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCTATGTCATCCCCTGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACTCGAATGTTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAGGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAGCTTCGTCAGTCGAGAAATCTGCATTCTGCTGATAAACGAATTGCTCCAGCTATGGTAAGGGAAGTGAAAAGTTCTAAGACAACTTCTTCCAGGAAGTCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTCTCAACATCTCCCGATGATACTTCGAAGAACTTGGTATCTCCTACTGGCAGAGACCGGTGGGCTTCTTGGAAAAGATTGCCTTCTCCAGCAGCAAAAAGTGTGAAAGAACCTACTTTGAAGGATCAGGGTGATAATAAGAAATTTAAATCTTTGAACATGTCAAAAATCAGGATGGGTGTTTCTGAAGCTGATTTGCCTGCTGCTAAGGTTTCTGAGCTTCCTCCGCCCAGAGATTCTCATGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAAGAAGAAATTCCAACTGCAAATGTGGAAGATCATTCAAGAATTTGCGCAGTTGCTGATCGATGTGATCAGAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTTTAGAGAAAATGATCGAGTCTTTTACGCAAAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCTAATTCTAGCGTGACTGAAGAATCAGATATTTCCCCAAAACACAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTTATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCCTTATTAACACCAAGGACCAGTCAGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACATGATGATCTTACGCAGATCAGTGATCTTGCAGATATTGCACGCTATTCAGCAAATACACCTCTGGGTGATGATTGCTCGATGCAATACCTGCTAACATGCCTTGAGGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCGCTGACAGTTGACACTTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAGTATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAGCAAGTACTGTTATTGATGAAGATACACCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCAATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTTGCAATAAAGGTTTTGAAGAAAGCTGATATGATTCGGAAGAATGCCGTTGAAAGTATTTTGGCAGAACGTGATATTTTAATTTCTGTGCGCAACCCTTTTGTGGTCCGCTTCTTCTACTCTTTTACTTGTCGTGACAATTTGTATCTCGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCCTTGTTGAGAAATTTGGGCTGCTTAGATGAAGATGTTGCTCGCGTATATATCGCAGAAGTTGTTCTTGCTTTGGAGTATCTGCATTCACTTGGGGTAGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGGACCACTCTTCTTGGCTATGATGAACCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGTTCTGCTGTTGGCACACCAGATTATTTGGCACCAGAGATACTATTGGGAACTGGACACGCTGTTTCGAGTTCAGGAGGGTGTGGCTTGTGGGTTTCGTTTTCCTTTTAA 4182 43.71 MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQRRKLLNLSKRGRLTLLNATLSNLPIYYLSPFQVPSDVIEQIERSFRNFVWDGNRVRKTAYLFHWDIRFQNKVFNVTLSELCVYLYARACTDSEHFLHTAVNTRNAVPMVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPIRSDKKKNKSAAKDEPQISNPSSSSFRGTVLKDASRSKDWKRKDSQAPLPIETPSKSDPISGFNLGPKAKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSSGGKREAASQKRLGFQENVKSYIRDASNSDNMPIGNAPSTERSPNLLGQPRVQNVASSNEAGCYESSWGCSDGLRNLDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNADAHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIAPAMVREVKSSKTTSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRWASWKRLPSPAAKSVKEPTLKDQGDNKKFKSLNMSKIRMGVSEADLPAAKVSELPPPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSVTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARYSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHAVSSSGGCGLWVSFSF 1393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27549152 27574474 + CmPI595203_04g013230.1 Cmu04g1323 414908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu04g1323 1393 Coils Coil 604 624 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 751 766 - -
Cmu04g1323 1393 FunFam RNA polymerase II subunit A C-terminal domain phosphatase 1 70 - -
Cmu04g1323 1393 Coils Coil 925 945 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 1011 1033 - -
Cmu04g1323 1393 FunFam RNA polymerase II subunit A 71 190 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 299 399 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 299 319 - -
Cmu04g1323 1393 Gene3D Transferase(Phosphotransferase) domain 1 1251 1378 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 439 470 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 779 799 - -
Cmu04g1323 1393 Gene3D Phosphorylase Kinase; domain 1 1168 1250 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 335 352 - -
Cmu04g1323 1393 ProSiteProfiles Protein kinase domain profile. 1171 1393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1323 1393 PANTHER SERINE/THREONINE-PROTEIN KINASE 874 1378 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cmu04g1323 1393 Pfam Ssu72-like protein 4 187 IPR006811 GO:0004721(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 353 367 - -
Cmu04g1323 1393 Pfam Protein kinase domain 1172 1377 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 439 511 - -
Cmu04g1323 1393 Gene3D - 71 189 - -
Cmu04g1323 1393 Gene3D - 1 70 - -
Cmu04g1323 1393 FunFam probable serine/threonine protein kinase IREH1 1169 1258 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 485 511 - -
Cmu04g1323 1393 SUPERFAMILY Protein kinase-like (PK-like) 1155 1378 IPR011009 -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 741 883 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 821 835 - -
Cmu04g1323 1393 CDD STKc_MAST_like 1177 1377 - -
Cmu04g1323 1393 FunFam AGC protein kinase 1251 1322 - -
Cmu04g1323 1393 SMART serkin_6 1171 1389 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 944 967 - -
Cmu04g1323 1393 MobiDBLite consensus disorder prediction 943 977 - -
Cmu04g1323 1393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1290 1302 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0504 Cmu-Chr1:5215523 Cmu04g1323 Cmu-Chr4:27549152 5.60E-240 dispersed
Cmu04g1323 Cmu-Chr4:27549152 Cmu06g0697 Cmu-Chr6:8115155 1.10E-43 dispersed
Cmu04g1323 Cmu-Chr4:27549152 Cmu05g1848 Cmu-Chr5:28534477 6.20E-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75490 PF00069 Pkinase 2.60E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu04g1323 K08789 - csv:101214945 1988.0