Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu04g1323 | ATGAAGTATCGTTATGCGATGGTTTGCTCATCCAACCAGAATCGAAGCATGGAGGCTCACTCTATCCTCAAAAGCAAGGGCTTCAACGTTTCATCCTATGGAACTGGGGCTCACGTGAAGCTTCCCGGACCTTCTCTCCGGGAACCCAATGTATACGATTTTGGTACCCCCTACAAGCACATGTTCGATGATCTCCGTCGAAAAGATCCTGAACTATACAAGCGTAACGGCATTCTGCCCATGCTTAAAAGAAATGCAGCTGTCAAAACGGCTCCTCAACGTTGGCAAGATAATGCAGCAGACGGTTCCTTTGATGTGGTATTTACTTTTGAAGAAAAGGTCTTTGATATGGTCATTGAAGATTTGAACACCCGCGATCATGCACTGATGAAAACTGTACTGATTGTTAATTTGGAGGTAAAAGATAACCACGAGGAGGCAGCTATAGGAGCACGACTTACTTTTGATCTTTGCCAGGAGATTGAACGTACTGAATCATGGGAAGATTCTATAGATGACATCGTGATTACCTTCGAGAAACAACAGAGAAGAAAACTGCTCAACCTATCCAAGAGAGGTAGACTAACTTTGTTGAATGCTACATTATCCAACCTCCCCATCTACTATCTCTCTCCGTTTCAAGTTCCATCTGATGTGATTGAACAAATTGAAAGGAGTTTCAGGAATTTTGTTTGGGACGGAAACCGGGTCAGAAAAACAGCTTACCTCTTTCACTGGGACATTAGATTTCAAAACAAAGTCTTCAATGTCACTCTGAGCGAGCTGTGTGTCTATCTCTATGCTAGGGCCTGCACCGATTCTGAACACTTCCTCCATACCGCAGTTAACACTAGGAACGCGGTTCCTATGGTATTCAAAGGCAGGTTTTTCTCGTCCTCCAAGAAGTCCGATTCTTCCAGCCCTGATGGATCCAGTCCCCGGTTCCTTGGTTCTAACTCACCCATCAGATCCGACAAGAAGAAGAACAAATCAGCCGCCAAAGATGAACCCCAGATTTCTAATCCCAGCAGCAGCAGCTTCAGAGGTACCGTTCTGAAAGATGCTTCCCGGAGCAAGGATTGGAAACGAAAAGACAGTCAAGCTCCATTGCCGATCGAGACGCCCTCGAAGTCTGACCCAATTTCCGGCTTCAACTTGGGGCCGAAGGCCAAGAAGTCGGCCGATGTGAAAGACGTGGCGTCATCGGTTTCACCTATTCTGGCATCATCCCTTGGGCTGAATAGGATAAAGACAAGATCAGGCCCGTTGCCGCAGGAGAGCTTCTTGGGTTTCAAAGGTGATAAGGGCTCCTTGGGTTCTAGCAATCTTTCCAGGAATTGCGGCGATGGAAGCTCAGGCTCGAATTCAGGTTCAACATGGTCGGGGTCTTCTAGTGGGGGGAAGAGAGAGGCGGCGAGTCAGAAAAGATTGGGTTTTCAGGAAAATGTTAAAAGCTATATTCGCGATGCTAGCAATTCCGACAATATGCCAATTGGTAATGCACCATCTACTGAGCGGAGTCCAAATTTGTTAGGACAGCCTCGAGTACAGAATGTCGCTTCATCCAATGAAGCTGGATGCTATGAATCATCATGGGGATGTTCTGACGGATTAAGAAATTTAGATTTCTGTACACCAGAGTCCTCTTATGATTGTGAAAATCCCAAGGAGTCTGAATCTCCGCGCTTTCAAGCTATACTGCGAGTCACAAGTGCTCCTCGAAGGAAGTATCCTGCCGATATCAAAAGTTTTTCCCATGAACTAAATTCAAAAGGCGTACGACCTTTCCCACTTTGGAAGTCACGCCGTTTAAATAATTTGGAGGAGATCTTAGTTATGATACGAGCAAAATTTGACAAGGCAAAGGAAGAAGTAAATTCTGACTTGGCTATTTTTGCTGCTGATCTGGTTGGAGTTCTTGAAAAAAATGCCGATGCTCATCCAGAGTGGCAAGAGACAATTGAAGACTTGTTGGTTTTAGCTCGAAGCTGTGCTATGTCATCCCCTGGTGAATTTTGGCTTCAGTGTGAAAGCATTGTTCAGGAATTGGATGATAGACGCCAAGAACTTCCTCCTGGCATGCTGAAACAACTTCATACTCGAATGTTGTTCATTCTCACTAGATGTACCAGGTTGCTGCAGTTCCATAAGGAAAGTGGGTTAGCTGAAGATGAAAATGTTTTTCAGCTTCGTCAGTCGAGAAATCTGCATTCTGCTGATAAACGAATTGCTCCAGCTATGGTAAGGGAAGTGAAAAGTTCTAAGACAACTTCTTCCAGGAAGTCTTACAGCCAGGAGCAGCGTGGTTTGGATTGGAGCAGAGAACATGATATACTGCCTGGGAATAATGTCTCAACATCTCCCGATGATACTTCGAAGAACTTGGTATCTCCTACTGGCAGAGACCGGTGGGCTTCTTGGAAAAGATTGCCTTCTCCAGCAGCAAAAAGTGTGAAAGAACCTACTTTGAAGGATCAGGGTGATAATAAGAAATTTAAATCTTTGAACATGTCAAAAATCAGGATGGGTGTTTCTGAAGCTGATTTGCCTGCTGCTAAGGTTTCTGAGCTTCCTCCGCCCAGAGATTCTCATGACCAACCTACAAAGCACCAACATAAACCTTCTTGGGGTTGGGGTGATCAACCAACTGTATCTGATGAGAGTTCAATAATTTGTCGCATTTGTGAAGAAGAAATTCCAACTGCAAATGTGGAAGATCATTCAAGAATTTGCGCAGTTGCTGATCGATGTGATCAGAAGGGTATAAGTGTTAATGAACGTCTACTCAGAATTGCTGAAACTTTAGAGAAAATGATCGAGTCTTTTACGCAAAAGGATTCTCAGCATGTAGGAAGTCCGGATGTTGCAAAAGTTTCTAATTCTAGCGTGACTGAAGAATCAGATATTTCCCCAAAACACAGTGATTGGTCCCGCAGGGGCTCAGAAGACATGCTAGATTGCTTCCATGAAACTGATAGTTCTGTATTTATGGATGACTTAAAAGGTTTACCTTCCATGTCTTGTAAAACTCGTTTTGGTCCAAAGTCTGATCAGGGTATGACAACATCATCGGCTGGTAGCATGACTCCTAGATCTCCCTTATTAACACCAAGGACCAGTCAGTTTGACTTGTTTTTGGCAGGGAAAGGTGCTTACTATGAACATGATGATCTTACGCAGATCAGTGATCTTGCAGATATTGCACGCTATTCAGCAAATACACCTCTGGGTGATGATTGCTCGATGCAATACCTGCTAACATGCCTTGAGGACTTGAGAGTTGTCATTAACCGCAGGAAGTTTAATGCGCTGACAGTTGACACTTTTGGCACTCGCATTGAAAAGTTAATCCGGGAGAAGTATTTGCAACTTTGTGAGCTGGTGGATGATGAAAAGATTGACATAGCAAGTACTGTTATTGATGAAGATACACCTCTTGAAGATGACATTGTTCGTAGCTTAAGAACTAGTCCAATCCATTCTTCAAAGGACCGTACATCAATTGATGACTTTGAGATTATAAAACCAATCAGCCGTGGGGCATTTGGTCGGGTTTTCCTGGCTAAAAAGAGGACAACGGGGGACCTTTTTGCAATAAAGGTTTTGAAGAAAGCTGATATGATTCGGAAGAATGCCGTTGAAAGTATTTTGGCAGAACGTGATATTTTAATTTCTGTGCGCAACCCTTTTGTGGTCCGCTTCTTCTACTCTTTTACTTGTCGTGACAATTTGTATCTCGTGATGGAGTATTTGAATGGAGGAGACCTTTACTCCTTGTTGAGAAATTTGGGCTGCTTAGATGAAGATGTTGCTCGCGTATATATCGCAGAAGTTGTTCTTGCTTTGGAGTATCTGCATTCACTTGGGGTAGTTCATCGGGACTTAAAGCCTGATAATTTATTAATAGCACATGATGGTCATATTAAGCTGACAGATTTTGGGCTTTCCAAGGTTGGTCTAATCAACAGTACTGATGATTTGTCTGGACCAGCTGTTAGCGGGACCACTCTTCTTGGCTATGATGAACCTACAATGTCTGCTTCTGAGCATCAACAAGAAAGACGGAAAAAGCGTTCTGCTGTTGGCACACCAGATTATTTGGCACCAGAGATACTATTGGGAACTGGACACGCTGTTTCGAGTTCAGGAGGGTGTGGCTTGTGGGTTTCGTTTTCCTTTTAA | 4182 | 43.71 | MKYRYAMVCSSNQNRSMEAHSILKSKGFNVSSYGTGAHVKLPGPSLREPNVYDFGTPYKHMFDDLRRKDPELYKRNGILPMLKRNAAVKTAPQRWQDNAADGSFDVVFTFEEKVFDMVIEDLNTRDHALMKTVLIVNLEVKDNHEEAAIGARLTFDLCQEIERTESWEDSIDDIVITFEKQQRRKLLNLSKRGRLTLLNATLSNLPIYYLSPFQVPSDVIEQIERSFRNFVWDGNRVRKTAYLFHWDIRFQNKVFNVTLSELCVYLYARACTDSEHFLHTAVNTRNAVPMVFKGRFFSSSKKSDSSSPDGSSPRFLGSNSPIRSDKKKNKSAAKDEPQISNPSSSSFRGTVLKDASRSKDWKRKDSQAPLPIETPSKSDPISGFNLGPKAKKSADVKDVASSVSPILASSLGLNRIKTRSGPLPQESFLGFKGDKGSLGSSNLSRNCGDGSSGSNSGSTWSGSSSGGKREAASQKRLGFQENVKSYIRDASNSDNMPIGNAPSTERSPNLLGQPRVQNVASSNEAGCYESSWGCSDGLRNLDFCTPESSYDCENPKESESPRFQAILRVTSAPRRKYPADIKSFSHELNSKGVRPFPLWKSRRLNNLEEILVMIRAKFDKAKEEVNSDLAIFAADLVGVLEKNADAHPEWQETIEDLLVLARSCAMSSPGEFWLQCESIVQELDDRRQELPPGMLKQLHTRMLFILTRCTRLLQFHKESGLAEDENVFQLRQSRNLHSADKRIAPAMVREVKSSKTTSSRKSYSQEQRGLDWSREHDILPGNNVSTSPDDTSKNLVSPTGRDRWASWKRLPSPAAKSVKEPTLKDQGDNKKFKSLNMSKIRMGVSEADLPAAKVSELPPPRDSHDQPTKHQHKPSWGWGDQPTVSDESSIICRICEEEIPTANVEDHSRICAVADRCDQKGISVNERLLRIAETLEKMIESFTQKDSQHVGSPDVAKVSNSSVTEESDISPKHSDWSRRGSEDMLDCFHETDSSVFMDDLKGLPSMSCKTRFGPKSDQGMTTSSAGSMTPRSPLLTPRTSQFDLFLAGKGAYYEHDDLTQISDLADIARYSANTPLGDDCSMQYLLTCLEDLRVVINRRKFNALTVDTFGTRIEKLIREKYLQLCELVDDEKIDIASTVIDEDTPLEDDIVRSLRTSPIHSSKDRTSIDDFEIIKPISRGAFGRVFLAKKRTTGDLFAIKVLKKADMIRKNAVESILAERDILISVRNPFVVRFFYSFTCRDNLYLVMEYLNGGDLYSLLRNLGCLDEDVARVYIAEVVLALEYLHSLGVVHRDLKPDNLLIAHDGHIKLTDFGLSKVGLINSTDDLSGPAVSGTTLLGYDEPTMSASEHQQERRKKRSAVGTPDYLAPEILLGTGHAVSSSGGCGLWVSFSF | 1393 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 27549152 | 27574474 | + | CmPI595203_04g013230.1 | Cmu04g1323 | 414908 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu04g1323 | 1393 | Coils | Coil | 604 | 624 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 751 | 766 | - | - | |
Cmu04g1323 | 1393 | FunFam | RNA polymerase II subunit A C-terminal domain phosphatase | 1 | 70 | - | - | |
Cmu04g1323 | 1393 | Coils | Coil | 925 | 945 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 1011 | 1033 | - | - | |
Cmu04g1323 | 1393 | FunFam | RNA polymerase II subunit A | 71 | 190 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 299 | 399 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 299 | 319 | - | - | |
Cmu04g1323 | 1393 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1251 | 1378 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 439 | 470 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 779 | 799 | - | - | |
Cmu04g1323 | 1393 | Gene3D | Phosphorylase Kinase; domain 1 | 1168 | 1250 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 335 | 352 | - | - | |
Cmu04g1323 | 1393 | ProSiteProfiles | Protein kinase domain profile. | 1171 | 1393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu04g1323 | 1393 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 874 | 1378 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Cmu04g1323 | 1393 | Pfam | Ssu72-like protein | 4 | 187 | IPR006811 | GO:0004721(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro) | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 353 | 367 | - | - | |
Cmu04g1323 | 1393 | Pfam | Protein kinase domain | 1172 | 1377 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 439 | 511 | - | - | |
Cmu04g1323 | 1393 | Gene3D | - | 71 | 189 | - | - | |
Cmu04g1323 | 1393 | Gene3D | - | 1 | 70 | - | - | |
Cmu04g1323 | 1393 | FunFam | probable serine/threonine protein kinase IREH1 | 1169 | 1258 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 485 | 511 | - | - | |
Cmu04g1323 | 1393 | SUPERFAMILY | Protein kinase-like (PK-like) | 1155 | 1378 | IPR011009 | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 741 | 883 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 821 | 835 | - | - | |
Cmu04g1323 | 1393 | CDD | STKc_MAST_like | 1177 | 1377 | - | - | |
Cmu04g1323 | 1393 | FunFam | AGC protein kinase | 1251 | 1322 | - | - | |
Cmu04g1323 | 1393 | SMART | serkin_6 | 1171 | 1389 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 944 | 967 | - | - | |
Cmu04g1323 | 1393 | MobiDBLite | consensus disorder prediction | 943 | 977 | - | - | |
Cmu04g1323 | 1393 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1290 | 1302 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0504 | Cmu-Chr1:5215523 | Cmu04g1323 | Cmu-Chr4:27549152 | 5.60E-240 | dispersed | |
Cmu04g1323 | Cmu-Chr4:27549152 | Cmu06g0697 | Cmu-Chr6:8115155 | 1.10E-43 | dispersed | |
Cmu04g1323 | Cmu-Chr4:27549152 | Cmu05g1848 | Cmu-Chr5:28534477 | 6.20E-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75490 | PF00069 | Pkinase | 2.60E-45 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu04g1323 | K08789 | - | csv:101214945 | 1988.0 |