Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu05g0009 | ATGGTTAAATTGAACAAAGCACACCCAGAGCAAAGACGAATAATGGAAACTGGATCCCAAAGATCATCAGGGCGAGGGCAGGTTGTTCCCAATATCAATTATCAAGTTCAAGTGTCGTTCCATCTCTCAAATGCACCGCATGATCCCCAGCCCATCCAGGAAATGGGATTCGTGCAATTGGAAGAGCAGAGCCAGGTTTTGAGCTTCTTGGCACCAAATAACGCCGCCATGCCACCTGCCTTTACTAACCCTACTACTTCTGCTCACACCTCACACCTCCTGCCTCGACCTTCTTGGAGTTCACAACAGCAGGTGGGCGGAACAGTGGATCCGAAGGCCGGGAACGAGGAAAACTGCACGGGTAGTGCTAGTGACGGCAGCAATTCATGGTGGAGAAACACAAACCCAGATAAGAGTAAGGTGAAGGTGAGGAGAAAGCTGAGAGAGCCGCGTTTCTGTTTCCAGACCAGAAGCGATGTAGATGTCCTCGACGATGGCTATAAATGGAGAAAATATGGCCAAAAAGTCGTCAAGAACAGCCTTCATCCTAGAAGCTACTATCGTTGCACGCATAGCAACTGCCGAGTGAAGAAGAGAGTGGAGAGACTGTCGGAGGATTGCCGGATGGTGATAACCACCTACGAAGGGTTAGGCGACGCCAAATCCAGTTGCACCTATAAAATCCCTTTTACGCATCAACCCGCTTCAACTGCGGTCTCGGCGTCTCCCACTACACAGTTTGAAGAGAAGCATAGCTCAGCAGAACACGCCGGTCCACAAAAAATGGAGCAGAGCTTTATCATGATCAAGCCTGATGGAGTTCAGAGAGGCCTGGTTGGAGAGATCATCAGTAGGTTTGAGAAGAAGGGCTTTTCTCTAAGAGGTTTGAAACTCATGTCTGTGGATCGTGCTTTTGCTGAGAATCATTACTCTGATCTTGCTGGAAAGCCCTTTTTCAATGGATTGATTGAATACATAATTTCTGGCCCCGTCGTTGCAATGATCTGGGAGGGGAAAAATGTTGTAGCAACTGGTAGGAAGATCATCGGAGCCACGAAGCCAGTAGATTCTGATGTGGGAACCATCCGTGGTGACTATGCAATTGATGTTGGCAGGAACATCATTCATGGAAGTGACTCGGTGGAGAGTGCAAGGAAGGAAATTGCTCTGTGGTTCCCTGAAGGTCCAGTTTCCTGGCAGAGCAACCTTCATTCCTGGATCTACGAGTGA | 1230 | 48.62 | MVKLNKAHPEQRRIMETGSQRSSGRGQVVPNINYQVQVSFHLSNAPHDPQPIQEMGFVQLEEQSQVLSFLAPNNAAMPPAFTNPTTSAHTSHLLPRPSWSSQQQVGGTVDPKAGNEENCTGSASDGSNSWWRNTNPDKSKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGLGDAKSSCTYKIPFTHQPASTAVSASPTTQFEEKHSSAEHAGPQKMEQSFIMIKPDGVQRGLVGEIISRFEKKGFSLRGLKLMSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPVDSDVGTIRGDYAIDVGRNIIHGSDSVESARKEIALWFPEGPVSWQSNLHSWIYE | 409 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 148472 | 155574 | + | CmPI595203_05g000090.1 | Cmu05g0009 | 414923 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu05g0009 | 409 | SMART | ndk_5 | 262 | 399 | IPR034907 | - | |
| Cmu05g0009 | 409 | MobiDBLite | consensus disorder prediction | 83 | 136 | - | - | |
| Cmu05g0009 | 409 | SUPERFAMILY | WRKY DNA-binding domain | 155 | 216 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu05g0009 | 409 | PRINTS | Nucleoside diphosphate kinase signature | 350 | 366 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cmu05g0009 | 409 | PRINTS | Nucleoside diphosphate kinase signature | 329 | 346 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cmu05g0009 | 409 | PRINTS | Nucleoside diphosphate kinase signature | 265 | 287 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cmu05g0009 | 409 | PRINTS | Nucleoside diphosphate kinase signature | 309 | 328 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cmu05g0009 | 409 | PRINTS | Nucleoside diphosphate kinase signature | 373 | 392 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cmu05g0009 | 409 | PANTHER | NUCLEOSIDE DIPHOSPHATE KINASE | 252 | 409 | - | GO:0004550(PANTHER) | |
| Cmu05g0009 | 409 | SMART | WRKY_cls | 163 | 222 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu05g0009 | 409 | ProSiteProfiles | WRKY domain profile. | 158 | 216 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu05g0009 | 409 | FunFam | Nucleoside diphosphate kinase | 259 | 409 | - | - | |
| Cmu05g0009 | 409 | ProSitePatterns | Nucleoside diphosphate kinases active site. | 373 | 381 | IPR023005 | - | |
| Cmu05g0009 | 409 | Gene3D | - | 261 | 409 | IPR036850 | - | |
| Cmu05g0009 | 409 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Cmu05g0009 | 409 | CDD | NDPk_I | 263 | 392 | - | - | |
| Cmu05g0009 | 409 | Pfam | WRKY DNA -binding domain | 164 | 216 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu05g0009 | 409 | Gene3D | WRKY domain | 150 | 216 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cmu05g0009 | 409 | Hamap | Nucleoside diphosphate kinase [ndk]. | 262 | 397 | IPR001564 | GO:0004550(InterPro)|GO:0006183(InterPro)|GO:0006228(InterPro)|GO:0006241(InterPro) | |
| Cmu05g0009 | 409 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cmu05g0009 | 409 | FunFam | WRKY transcription factor 57 | 149 | 222 | - | - | |
| Cmu05g0009 | 409 | SUPERFAMILY | Nucleoside diphosphate kinase, NDK | 262 | 409 | IPR036850 | - | |
| Cmu05g0009 | 409 | Pfam | Nucleoside diphosphate kinase | 263 | 394 | IPR034907 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g0956 | Cmu-Chr3:4175197 | Cmu05g0009 | Cmu-Chr5:148472 | 8.50E-52 | dispersed | |
| Cmu05g0009 | Cmu-Chr5:148472 | Cmu07g1141 | Cmu-Chr7:26525999 | 6.20E-45 | dispersed | |
| Cmu05g0009 | Cmu-Chr5:148472 | Cmu02g0095 | Cmu-Chr2:1079129 | 2.10E-32 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 6065 | PF00334 | NDK | 2.70E-52 | No_clan | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu05g0009 | K00940 | - | csv:101216931 | 305.834 |