Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0042 ATGGGCGGGAGAGATGATGAGTTGGGGCTGAGTTTGAGTTTAGGGTTTGGAGTTACGACTCAGCCTTCTTTTCAGCCGACTCACATGCACAGGCCGTTGAATAACTCCATGCATAATCACCTCCGCAAGAGTTCTTGGAATGAGCTTTTTCAATTTTCTGATCGAAACGCCGATTCGAGGTCGTTTCTTAGGGGAATCGACGTGAATCGGCTACCGACGGGCGCAGACGGTGAGGAAGAGAACGGCGTTTCATCTCCGAACAGTACGATTTCCAGCATCAGTGGAAAGAGGAGTGAGAGAGAAGCGGCCGGAGACGAGGCTGAGGCTGAGGCTGAGGCTGGGGCAGAGGCGGAAGCCGAGAGGGCCTCGTGCTCGCGAGGGAGTGACGATGAGGACGGCGGAGGCGGCGACGGTGACGCCTCGAGAAAGAAGCTGAGGCTATCGAAGGAACAGTCGATGGTTCTTGAGGAGACTTTCAAAGAGCATAATACGCTCAATCCAAAGCAAAAGCTGGCACTTGCAAAGCAGCTGAATCTGACACCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGGGCACGGACCAAATTGAAGCAAACAGAAGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAGAATCTCACAGAGGAAAACAGAAGGCTGCAGAAGGAAGTGCAAGAGTTGAGAGCACTCAAGCTTTCTCCACAGCTCTATATGCACATGAATCCTCCAACAACCCTCACCATGTGCCCTCAATGTGAGCGTGTGGCGGTGTCTTCGTCTTCTTTGGCCTCGGCTGCTACGACCACACGCCATCCAGCAGCAGCTAGTGTGCAGCGCCCCTCGATGGCCATTAACCCGTGGGCAGTGTTACCAATCCAACGTTGA 888 53.04 MGGRDDELGLSLSLGFGVTTQPSFQPTHMHRPLNNSMHNHLRKSSWNELFQFSDRNADSRSFLRGIDVNRLPTGADGEEENGVSSPNSTISSISGKRSEREAAGDEAEAEAEAGAEAEAERASCSRGSDDEDGGGGDGDASRKKLRLSKEQSMVLEETFKEHNTLNPKQKLALAKQLNLTPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPQCERVAVSSSSLASAATTTRHPAAASVQRPSMAINPWAVLPIQR 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 526756 528782 + CmPI595203_05g000420.1 Cmu05g0042 414956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0042 295 Pfam HD-ZIP protein N terminus 1 101 IPR006712 GO:0005634(InterPro)
Cmu05g0042 295 Pfam Homeodomain 142 196 IPR001356 GO:0003677(InterPro)
Cmu05g0042 295 CDD homeodomain 142 199 IPR001356 GO:0003677(InterPro)
Cmu05g0042 295 MobiDBLite consensus disorder prediction 114 143 - -
Cmu05g0042 295 Gene3D - 135 203 - -
Cmu05g0042 295 SMART HOX_1 140 202 IPR001356 GO:0003677(InterPro)
Cmu05g0042 295 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 7 275 IPR050762 -
Cmu05g0042 295 ProSitePatterns 'Homeobox' domain signature. 173 196 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu05g0042 295 SMART halz 198 241 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0042 295 Coils Coil 204 234 - -
Cmu05g0042 295 MobiDBLite consensus disorder prediction 80 96 - -
Cmu05g0042 295 Pfam Homeobox associated leucine zipper 198 232 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0042 295 MobiDBLite consensus disorder prediction 71 143 - -
Cmu05g0042 295 ProSiteProfiles 'Homeobox' domain profile. 138 198 IPR001356 GO:0003677(InterPro)
Cmu05g0042 295 SUPERFAMILY Homeodomain-like 128 199 IPR009057 -
Cmu05g0042 295 FunFam Homeobox-leucine zipper protein 18 127 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0042 Cmu-Chr5:526756 Cmu10g1087 Cmu-Chr10:3100103 1.00E-73 dispersed
Cmu05g0042 Cmu-Chr5:526756 Cmu10g2496 Cmu-Chr10:31622757 5.10E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6073 PF04618 HD-ZIP_N 3.90E-31 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0042 K09338 - csv:101222132 450.669