Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g0083 | ATGAAGATTGAAGATGGGTTGCGGAGTGTTGGTGGGAAGGATGAGGATAAGACTGTGGTTGCTGCTGTTTTGGGGACTCGGGCTTTTAATTACTTGATGGCTTGCTCTGTTTCGAATGAGAATCTGTTTATGGCGGTGAGGAATGATGAGAATTTGCAGAACAAGCTGTCGGATCTGGTAGAGAGACCAAACGCTTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCTAAATCTGGTGAATGGGTTTTGGGATGGGGAGATGGATCGTGTAGGGATCCTAGGGATGGAGAGGAAACAGATTCTACACAGATTCTTAGTCTCCGGCTTGAAGATGAGAGCCAACAGAGGATGAAGAAAAGAGCACTGCAGAAGCTTCACACACTCTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTAGACAGACTTACTGATACTGAGATGTTTTTTCTTGCTTCCATGTATTTCTCATTCCCTCGTGGAGAGGGGGGCCCTGGGAAGTGTTTGGCGTCCGGGAAACATACCTGGCTTTCAGATGTGCTCAATTTGCCATCTGAATATTGTGTGAGATCATACCTGGCGAAATCTGCGGGAATTCGGACGATTGTTTTGGTGCCGACTGATGTTGGAGTAGTTGAATTGGGTTCTGTTAGATCCGTGAATGAGAGCTTAGAGTTAGTGCAGCTGATCAGATCATTGTTTTCATCCCAACTTTCACTCGACAGAGTTAGGTCATCGGCGGCGATGTCGATGATGGCTGAAAGAAAAGATGAAAGCACCCCATTTGCGAGTTTGGGAATTGCAGAAAGAGGAGAAGGAGGAGGGGGGATTCCTAAGGTTTTTGGGCAGACTTTGAACTCGGGGAACATGGGTCGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCATGTGCCAATGGAGGTAGAATACAGTTTCAAAGCCCTCGAAATGGCATTCGCAGTCCGAATTTGGCACATGTTCATGGTCTCAAGCAGGGGAATCCTGCAGAAATTTATGGCTCTCCAACTCCACCAGTAAATAATAATCACGAGCAGCAGCTAGTTAATGGAGTCAGAGATGAATTTTGTCTCAATCCATATCAATCACAAAAGCTGGCCCAAATGCAAATTGATTTCTCAGCAGCAACATCAAGGCCTTCTGTGATTAACCGTGTAATAGCAGATACGGAGCATTCAGATGTAGAGCCTCAATGCAAAGAAGAGGGGCCTGGCACCGACGAAAGACGACCTCGCAAACGAGGCAGAAAGCCTGCAAATGGTAGGGAGGAACCACTAAATCATGTTGAGGCAGAGAGGCAGCGGCGTGAAAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTTGTGCCCAATATCTCCAAAATGGACAAAGCTTCACTGCTCGGAGATGCCATTGCTTACATAAACGAGCTTCAAGAAAAAGTGAAGGCCATGGAATTTGAACGTGAGAAATCCGGCCTCACCTCAAGTGATGCAACCCCTTCGGAGGGGAACCCAGAAATTGAAAATAAAGAACAATTCCTTGACGTCGACATTGAGGTTGAGGCTGCTCATGATGAAGTCATTGTGAAGGTTAGCTGCCCATTAGAGTCACACCCTGTATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTCTCTGAAGCAAATGATAAAGTTTTGCACACATTTGTCATCAAGTCTCCCGGATCCGAGCAGTTGACGAAGGAACAGTTTATAGCTGCATTTTCCCGGGACTCCACTTCGTTACATCCTTTATCAACAGTTGGGTAG | 1857 | 45.72 | MKIEDGLRSVGGKDEDKTVVAAVLGTRAFNYLMACSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETDSTQILSLRLEDESQQRMKKRALQKLHTLFGGSDEDNYALGLDRLTDTEMFFLASMYFSFPRGEGGPGKCLASGKHTWLSDVLNLPSEYCVRSYLAKSAGIRTIVLVPTDVGVVELGSVRSVNESLELVQLIRSLFSSQLSLDRVRSSAAMSMMAERKDESTPFASLGIAERGEGGGGIPKVFGQTLNSGNMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIRSPNLAHVHGLKQGNPAEIYGSPTPPVNNNHEQQLVNGVRDEFCLNPYQSQKLAQMQIDFSAATSRPSVINRVIADTEHSDVEPQCKEEGPGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQEKVKAMEFEREKSGLTSSDATPSEGNPEIENKEQFLDVDIEVEAAHDEVIVKVSCPLESHPVSRVIKAMKDAQINVVDSKLSEANDKVLHTFVIKSPGSEQLTKEQFIAAFSRDSTSLHPLSTVG | 618 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 824216 | 826074 | + | CmPI595203_05g000830.1 | Cmu05g0083 | 414997 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g0083 | 618 | PANTHER | MYC | 41 | 607 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro) | |
Cmu05g0083 | 618 | SMART | finulus | 449 | 498 | IPR011598 | GO:0046983(InterPro) | |
Cmu05g0083 | 618 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 446 | 504 | IPR036638 | GO:0046983(InterPro) | |
Cmu05g0083 | 618 | CDD | bHLH_AtAIB_like | 440 | 513 | - | - | |
Cmu05g0083 | 618 | FunFam | Transcription factor bHLH13 | 436 | 509 | - | - | |
Cmu05g0083 | 618 | Gene3D | - | 436 | 507 | IPR036638 | GO:0046983(InterPro) | |
Cmu05g0083 | 618 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 443 | 492 | IPR011598 | GO:0046983(InterPro) | |
Cmu05g0083 | 618 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 52 | 240 | IPR025610 | - | |
Cmu05g0083 | 618 | MobiDBLite | consensus disorder prediction | 503 | 523 | - | - | |
Cmu05g0083 | 618 | MobiDBLite | consensus disorder prediction | 409 | 454 | - | - | |
Cmu05g0083 | 618 | MobiDBLite | consensus disorder prediction | 408 | 454 | - | - | |
Cmu05g0083 | 618 | Pfam | Helix-loop-helix DNA-binding domain | 447 | 493 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1750 | Cmu-Chr1:31220515 | Cmu05g0083 | Cmu-Chr5:824216 | 4.40E-13 | dispersed | |
Cmu02g0763 | Cmu-Chr2:8419685 | Cmu05g0083 | Cmu-Chr5:824216 | 5.00E-16 | dispersed | |
Cmu05g0083 | Cmu-Chr5:824216 | Cmu07g0134 | Cmu-Chr7:1282181 | 2.40E-72 | dispersed | |
Cmu05g0083 | Cmu-Chr5:824216 | Cmu10g1010 | Cmu-Chr10:2101974 | 1.10E-61 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6075 | PF14215 | bHLH-MYC_N | 6.30E-54 | CL0161 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g0083 | - | - | - | 0.0 |