Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0121 ATGTGGATGGCCCCATGTGGTTGTGCTGGGGACACGTCACCCCAGGACCACGTACAACCGGCCCCTTCCTTTCCAGTGGGGACCACCCCGCAGGTACGTGTTCAGTTCTATTTTCCTGACACCTGCTTGGGTGGCGGAGATCCCCTCCTCCGCATCACCTTCTCCGTGGCACTTTCCTCACCGTTCGATCCTATTCGTTTCCTCTATTCCAATTATTTTCACAGTCATGACAGATATCCTTTGGACTCTAAATTAAACAATCCGGATGTTGATATTTCTAAAATAAAGAAGATGATAGATGCCACTGTTGCACTCATGAAGTGTTTTAGCGAGTTATCGGACACGTGTATGGTGACGTGGACGGTGCCTTGGCGCTCCCTTTCTCTTTCTCAATTCTCATTCCCCCGCCTCTCCTCTTCCTTCACCACTTTCATTCTCTATTTCTCTTTCTCTTTCTCTCTGCGAGAAAACGTTTTCCCCTTCTTTTCAAGAGTTTTTTTCCCAGAGATAATGCAGAGGATTCAAGCTGCGGTTTTCGCCATCGAATCAGTTGAGGTGTCCAGTTTGAGCTGTATCTGTAACATGGGAACTAGTGAAGAGGCGAAGTCTGTGAAGACTGAAAAACCATCCTCACCAACACCGGATCAGAATAGTGTGCCAAATTCAGCCAGTATTCATGTTTTTCCTGATTGGGCAGCCATGCAGGCATATTATGGTCCTAGAGTTGCAGTTCCACCATACTACAACTCTGCTGTAGCTTCAGGTCATGCTCCTCACCCTTATATGTGGGCTCCACCACAGATGATTCCTCCATATGGTACTCCTTATGCTGCAATCTATTCTCATGGAGGTGTTTATGCCCATCCTGCAGTTTCTATGGGACCACATTCACATGGCCCTGGTGTTCCCTCATCACCTGGGGCTGCACCTCCTTTGAGTATTGAAACACCTTCAAAGGTATCTGGAAATAGCAGTCAAGGTTTAATGAAGAAACTGAAAGGTTTCGATGGCCTGGCAATGTCCATAGGCAATGTTAGCACTGAGACTGCTGAAGGGGGAGCTGAGCATGGACAATCAGAGAGTATGGAAACTGAAGGTTCCAGTGATGGAAGTGATGGAACTACTGCTGGGGCAAATCAAACCAAAAGGAAACGAAGCCGGGAGGGAACACCTACCACTGGTAAGGATGCAAAAATTGAGCCACAGGCAAGTCCAGTTACTGCTGCTGAAATGAATGAAAGCTCTAGCAAATTATTGGGCACGACCAAAGCAGCTAATGCGACTGGAAAACTTGGATCTGTGATTTCTCCTGGAATGTCTACTGCATTGGAACTGAGAAATCCTTCCAGTATAAATGCCATGACAAGTCCAACGACGGTTCCACCTTGTTCAGTACTGCCTTCTGAAGTCTGGCTCCAGAATGAAAAGGAGCTAAAACGGGAAAGGAGAAAACAGTCGAATAGAGAATCCGCTAGGAGGTCAAGGTTGAGGAAGCAGGCTGAGACAGAGGAACTAGCTCGTAAAGTTGATTCGCTGACTGCCGAGAATGTTGCTATTCGATCTGAAATAAGTAGATTATCAGAGAACTCCGAGAAACTTAAGAAAGAAAACTCTACCTTGATGGAAAAGCTTAAAAGCGCTCAATCAGGACGAACAGAAGCATTAGACATGAATGAAAAGAGGATGCAACAACCTGTAAGCACAGAAACCAAAGGACCTGTGAATAAAAGCATTAACGAAGAGAGTATCATCTGCAAGAAAAACTCGAGTTCGGGTGCAAAACTGCGGCAGCTCTTGGATACGAGTCCGAGGGCGGATGCAGTCGCTGCTAGCTAA 1836 46.46 MWMAPCGCAGDTSPQDHVQPAPSFPVGTTPQVRVQFYFPDTCLGGGDPLLRITFSVALSSPFDPIRFLYSNYFHSHDRYPLDSKLNNPDVDISKIKKMIDATVALMKCFSELSDTCMVTWTVPWRSLSLSQFSFPRLSSSFTTFILYFSFSFSLRENVFPFFSRVFFPEIMQRIQAAVFAIESVEVSSLSCICNMGTSEEAKSVKTEKPSSPTPDQNSVPNSASIHVFPDWAAMQAYYGPRVAVPPYYNSAVASGHAPHPYMWAPPQMIPPYGTPYAAIYSHGGVYAHPAVSMGPHSHGPGVPSSPGAAPPLSIETPSKVSGNSSQGLMKKLKGFDGLAMSIGNVSTETAEGGAEHGQSESMETEGSSDGSDGTTAGANQTKRKRSREGTPTTGKDAKIEPQASPVTAAEMNESSSKLLGTTKAANATGKLGSVISPGMSTALELRNPSSINAMTSPTTVPPCSVLPSEVWLQNEKELKRERRKQSNRESARRSRLRKQAETEELARKVDSLTAENVAIRSEISRLSENSEKLKKENSTLMEKLKSAQSGRTEALDMNEKRMQQPVSTETKGPVNKSINEESIICKKNSSSGAKLRQLLDTSPRADAVAAS 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1101480 1110361 + CmPI595203_05g001210.1 Cmu05g0121 415035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0121 611 MobiDBLite consensus disorder prediction 476 506 - -
Cmu05g0121 611 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 482 497 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0121 611 Pfam Disordered region downstream of MFMR 326 457 - -
Cmu05g0121 611 Pfam bZIP transcription factor 475 537 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0121 611 MobiDBLite consensus disorder prediction 525 575 - -
Cmu05g0121 611 MobiDBLite consensus disorder prediction 347 380 - -
Cmu05g0121 611 MobiDBLite consensus disorder prediction 295 328 - -
Cmu05g0121 611 Pfam G-box binding protein MFMR 195 291 IPR012900 -
Cmu05g0121 611 SUPERFAMILY Leucine zipper domain 478 534 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0121 611 Gene3D - 478 532 - -
Cmu05g0121 611 MobiDBLite consensus disorder prediction 407 435 - -
Cmu05g0121 611 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 477 540 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0121 611 PANTHER G-BOX-BINDING FACTOR 3-RELATED 207 569 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(PANTHER)|GO:0043565(InterPro)
Cmu05g0121 611 CDD bZIP_plant_GBF1 480 528 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0121 611 MobiDBLite consensus disorder prediction 202 221 - -
Cmu05g0121 611 MobiDBLite consensus disorder prediction 589 611 - -
Cmu05g0121 611 SMART brlzneu 475 539 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0121 611 MobiDBLite consensus disorder prediction 207 221 - -
Cmu05g0121 611 MobiDBLite consensus disorder prediction 561 575 - -
Cmu05g0121 611 MobiDBLite consensus disorder prediction 347 435 - -
Cmu05g0121 611 MobiDBLite consensus disorder prediction 525 541 - -
Cmu05g0121 611 Coils Coil 495 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0121 Cmu-Chr5:1101480 Cmu10g0976 Cmu-Chr10:1687103 5.90E-23 dispersed
Cmu05g0121 Cmu-Chr5:1101480 Cmu09g1108 Cmu-Chr9:11323078 2.30E-27 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6079 PF16596 MFMR_assoc 1.70E-21 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0121 K09060 - csv:101213720 733.406