Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0140 ATGGAGGAATATGGCAAACTACAATACCCACCTCCGCCGCCGTCGCCGCCTCCGCCATGTTCAGATCCTGATGCAACCCCTCTGGAAATCGACTGGATCGCAGTTCTCTCTGACCAAGAAGTCACTGGAGACTTAGCGGCGGCAGCAGCAACTTGCGAGTCATCGGAAACGAGAAGGGACGAAGAGAAGGGGGAGCGGAGGAAGAAAGGCGGTCGCCGGTGGAGAAGGACCGCCGGCTGCCGGAGGTTTGAGTTTCAGACGAGGAGTGCTGAAGATATTCTTGATGATGGATATCGGTGGCGCAAGTACGGACAAAAAGCTGTCAAACACAGCCTCCATCCGAGGAGCTACTATAGGTGTACATACCTCACATGCAATGTGAAGAAACAAGTTCAAAGGCTATCAAAAGACACAAGTATTGTTGTGACTACTTATGAGGGAACTCACAACCATCCTTCTCACTTCCTCATGCAAACCCTAACTCCTCTTCTCAAACAAATTCAAACTACTTTTCCACTTTCTAAATTTTTTATGTATTAG 540 48.89 MEEYGKLQYPPPPPSPPPPCSDPDATPLEIDWIAVLSDQEVTGDLAAAAATCESSETRRDEEKGERRKKGGRRWRRTAGCRRFEFQTRSAEDILDDGYRWRKYGQKAVKHSLHPRSYYRCTYLTCNVKKQVQRLSKDTSIVVTTYEGTHNHPSHFLMQTLTPLLKQIQTTFPLSKFFMY 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1229727 1230595 - CmPI595203_05g001400.1 Cmu05g0140 415054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0140 179 MobiDBLite consensus disorder prediction 1 26 - -
Cmu05g0140 179 FunFam WRKY transcription factor 57 80 154 - -
Cmu05g0140 179 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 57 152 IPR044810 GO:0003700(InterPro)
Cmu05g0140 179 SMART WRKY_cls 94 153 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0140 179 ProSiteProfiles WRKY domain profile. 89 154 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0140 179 MobiDBLite consensus disorder prediction 46 73 - -
Cmu05g0140 179 Gene3D WRKY domain 78 153 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0140 179 MobiDBLite consensus disorder prediction 7 24 - -
Cmu05g0140 179 SUPERFAMILY WRKY DNA-binding domain 87 152 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0140 179 MobiDBLite consensus disorder prediction 54 68 - -
Cmu05g0140 179 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0140 Cmu-Chr5:1229727 Cmu07g1525 Cmu-Chr7:30462554 1.50E-27 dispersed
Cmu05g0140 Cmu-Chr5:1229727 Cmu07g0787 Cmu-Chr7:19914567 9.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6081 PF03106 WRKY 4.30E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0140 - - - 0.0