Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0143 ATGGAAGTCGATTGGGATCTTCACGCCGTCGTCAGAGGCTACTCCGCCGTGCCCTCCGCCGCCACCATTATTCCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATAACTCTATTCCTTTTTCTTTTACCAGAGACCTAACCAACCAAACAAAAAGTCATTTCTTCACCCTTCAAGATCCATTTCAACCCCCCAATTGCAACTCCACTGAAGAATTGCATGAGCTTTTCAAACCCTTTTTCCCCAAATCACAACCCTCTCCTCCGCCGCCGCCTCCACCGCCTGCTCCGCCGCTTCTTTCTTCTCCGGCTGCTAAAATTCTGACCCATCACAAGCAACATCAGAGCACCCATCTCCCCAAACAGCTCCATTCAACCCCTGTTTCTGCTCCGAGATCCAAACGCCGGAAGAATCAGTTGAAGAAAGTTTGTCAAGTTCCCGCGGAGAGTCTGTCTTCGGATATTTGGGCTTGGCGAAAATATGGACAAAAACCCATTAAAGGATCTCCATATCCAAGGGGATATTACAGATGTAGCAGTTCGAAGGGTTGCATGGCCCGAAAACAAGTCGAGAGGAACAGATCCGACCCGGGAATGTTCATAGTCACGTACACGGCGGAGCACAACCACCCGGCGCCGACTCACCGGAACTCCCTCGCCGGGTCCACCCGTCAGAAACCCATAACAACGACGCCCACCGCTTCCGGATCTGAAAAACCCGACCCGAAACAGCCGGTTTGCTCGTCGGAAGAACAGAGTACGATCACAGAGAGCAAAGAAGAGAAGGAGGAATTATTAATGGCCGAAGATGAAGAAGACGACGATCTGGGGGTCTCCGATTTGATCGTCAACGACGATTTCTATGTGGGTTTTGAAGAGCTCGACAGCCCAATCACCGATGACTGCTTTTCCGATGAGTTTCCGACGAGTTTCGACCTTCCATGGTTGTTTAATGGAAACCCAGACAGCGAAATTGTAAAACTCCCCTGTTAA 993 50.05 MEVDWDLHAVVRGYSAVPSAATIIPSSSSSSSSSSNNSIPFSFTRDLTNQTKSHFFTLQDPFQPPNCNSTEELHELFKPFFPKSQPSPPPPPPPPAPPLLSSPAAKILTHHKQHQSTHLPKQLHSTPVSAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPITTTPTASGSEKPDPKQPVCSSEEQSTITESKEEKEELLMAEDEEDDDLGVSDLIVNDDFYVGFEELDSPITDDCFSDEFPTSFDLPWLFNGNPDSEIVKLPC 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1251759 1252928 - CmPI595203_05g001430.1 Cmu05g0143 415057
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0143 330 SMART WRKY_cls 152 212 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0143 330 FunFam WRKY transcription factor 22 136 206 - -
Cmu05g0143 330 Pfam WRKY DNA -binding domain 154 211 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0143 330 SUPERFAMILY WRKY DNA-binding domain 150 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0143 330 Gene3D WRKY domain 136 206 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0143 330 ProSiteProfiles WRKY domain profile. 147 213 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu05g0143 330 MobiDBLite consensus disorder prediction 207 276 - -
Cmu05g0143 330 MobiDBLite consensus disorder prediction 79 145 - -
Cmu05g0143 330 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 264 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Cmu05g0143 330 MobiDBLite consensus disorder prediction 210 238 - -
Cmu05g0143 330 MobiDBLite consensus disorder prediction 82 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0143 Cmu-Chr5:1251759 Cmu06g1439 Cmu-Chr6:25661251 1.20E-27 dispersed
Cmu01g2484 Cmu-Chr1:36697054 Cmu05g0143 Cmu-Chr5:1251759 1.40E-38 transposed
Cmu03g1450 Cmu-Chr3:10198678 Cmu05g0143 Cmu-Chr5:1251759 9.60E-38 transposed
Cmu01g0090 Cmu-Chr1:736584 Cmu05g0143 Cmu-Chr5:1251759 2.10E-38 wgd
Cmu05g0143 Cmu-Chr5:1251759 Cmu07g0788 Cmu-Chr7:20006302 1.50E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6082 PF03106 WRKY 4.40E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0143 K13425 - csv:101217082 503.827