Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0157 ATGGCTCATCCACCGCTGGATGGATCATCTCGCGGCAATGGAATGAACGTATCCGACGGCAGGAACTCGTCTGAGGAGCTTTTAGGAGCTACATTTTCACTTCAATCGGATTCGTCCATAACAGATTTAGTATCTCAATTGATAAATCTTGTTCCTGTCTGGTTCTTACGGAGTTTACTGGACCCTTACACAAAGATTTCCGAATACGTTGACCGGGTTCTTAGAACGAGTGTTATTCTAAATAAAAGATACTATAAAGATGAATCTCACAGTTTGAAGAGCGCCTCTGCATGGCGTTTACATATCCCTAGTTATGGTACACGTCGCATTGGTACATTTGTGCCCGCATCGTCGTTGAAATACTGGAACACTATCCCTCTTACTTCTCTTGGAAATCTATCAAATTCTCGATTTTATTCATCGGCTTCGGGTAGGAAAGTTGATATAACTGGAGATACTGGTGTTCCAGCAGCTTCTGCGGGTGTTGAACCGGATATCAGTAACCCCCCTGATCTTGGAAAGGACTTGCTTGAAAGGGTTAAGGATGTTTGGCAGAGTGCCGTAGATGCAACATCTTATACCGGGCAGAAGGCTAAAGAAGTATCGGATGAATTATCTCCGCATGTAGATAAACTCTTCAATTCACATCCATATCTAAAAAATGTGATTGTTCCTGTAAGTATGACCTTGACTGCTACTCTTTTGGCTTGGGTGGTAATGCCCAGGCTTTTGAGGAGATTTCATAAGTATTCAATGCGAAGTCCTGTTGCCATACTATCTGGAAGCATACCCAGTGAGGAAATTCCATATGAGAAAAGTTTTTGGGGTGCACTTGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCTTTTTCTCAAATTGGCATGATGGTTGCACCAACTGCAGTAGCACCAGAGTTTGTTTCACAGGCATGCAGGGGGGGTGTAATCCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGTTATCTCGAGCCTTGGCCACCCAGACTTTTGCAGGGCTTGATCGGGACAGGTTACTTACCATTGATAAAGTTTCATCTGTTGCTTTATTTGCTATTGGATTAATGGCTTTGGCCGAGGCATCTGGTGTGGCCGTTCAATCTATGTTGACAGTTGGTGGTATTGGAGGAGTGGCCACTGCTTTTGCTGCGAGGGACATTCTTGGTAATATTTTGAGTGGCTTAACAATGCAGTTTTCACAACCCTTCTCACTTGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTCATGACAACATCACTTTTAAGTGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTGTTTTCTAGCCAGGTCATTATAAATAAGTCGCGGGCACAGTGGCGAGCAATCACAAAGAAAATTCCTTTGCATGTTGATGATTTCAGTACAGTTTCTCAGATATCAGATGGTATTAAGAATATGCTTATGTCTCACCCTAAGGTGTTCTTGGGCAAAGAGGCTCCTTATTGTTTTCTCTCTCAAATTGAAAGTACATATGCAGAATTGACATTCGGTTGTAACCTTAAGAAAATGGGTAAAGAAGAATTGTTCTCTACAGAGCAAGATATCCTCCTTCAGTCAGTACAGATCATTAAGGAGAATGGTGCAAGCTTAGGTAGCACCATGTCAGATTGGACGAACAATTCTGCAGCAATTCTCAATGCGATTGGGAGAGCCATGAAGAAAGCAACTCATCCATAA 1758 42.21 MAHPPLDGSSRGNGMNVSDGRNSSEELLGATFSLQSDSSITDLVSQLINLVPVWFLRSLLDPYTKISEYVDRVLRTSVILNKRYYKDESHSLKSASAWRLHIPSYGTRRIGTFVPASSLKYWNTIPLTSLGNLSNSRFYSSASGRKVDITGDTGVPAASAGVEPDISNPPDLGKDLLERVKDVWQSAVDATSYTGQKAKEVSDELSPHVDKLFNSHPYLKNVIVPVSMTLTATLLAWVVMPRLLRRFHKYSMRSPVAILSGSIPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTAVAPEFVSQACRGGVILSLVWFIYRWKTNVLSRALATQTFAGLDRDRLLTIDKVSSVALFAIGLMALAEASGVAVQSMLTVGGIGGVATAFAARDILGNILSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIINKSRAQWRAITKKIPLHVDDFSTVSQISDGIKNMLMSHPKVFLGKEAPYCFLSQIESTYAELTFGCNLKKMGKEELFSTEQDILLQSVQIIKENGASLGSTMSDWTNNSAAILNAIGRAMKKATHP 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1373321 1377096 - CmPI595203_05g001570.1 Cmu05g0157 415071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0157 585 Gene3D - 310 410 - -
Cmu05g0157 585 MobiDBLite consensus disorder prediction 1 22 - -
Cmu05g0157 585 SUPERFAMILY Sm-like ribonucleoproteins 396 461 IPR010920 -
Cmu05g0157 585 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 315 395 IPR011014 GO:0016020(InterPro)
Cmu05g0157 585 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 194 566 - -
Cmu05g0157 585 Gene3D - 412 460 IPR023408 -
Cmu05g0157 585 Pfam Mechanosensitive ion channel, beta-domain 396 463 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0157 K22047 - - csv:101220483 897.501
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu05g0157 . 175 568 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.4e-153 537.7
Cmu08g1106 . 15 656 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.7e-196 682.9
Cmu10g1572 . 109 782 Mechanosensitive Ion Channel Family AT5G10490 55.4 2.8e-191 665.6
Cmu08g1106 . 15 636 Mechanosensitive Ion Channel Family AT1G58200 58.0 3.6e-199 691.8
Cmu10g1572 . 97 559 Mechanosensitive Ion Channel Family AT1G58200 65.0 2.5e-171 599.4
Cmu02g1115 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.1e-259 891.7
Cmu02g0405 . 91 952 Mechanosensitive Ion Channel Family AT1G53470 51.1 1.0e-238 823.5
Cmu02g1115 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Cmu02g1115 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Cmu02g0405 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.9 5.0e-270 927.5
Cmu02g1115 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.2e-237 818.1
Cmu02g0405 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Cmu02g1115 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.1e-163 572.0
Cmu05g1606 . 62 719 Mechanosensitive Ion Channel Family AT5G12080 58.2 2.9e-202 702.2
Cmu03g2121 . 58 750 Mechanosensitive Ion Channel Family AT5G12080 53.7 6.7e-199 691.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33