Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0168 ATGATGTTGGAAAACGAGAGATTGCTTCCAAAATCAGTCCTGCTTGAACTTGCATTCCAACAAAATCTGGAGGAGCTCGCGTCTTCAGTTCCACGAAGTTTCTCCTTCAATGAATTGGGGAATCGCGACAATTGGCAAAACAGAGAGCTCAAGAGAGAACGATTCCTAGAGTTTCTTATCATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTGGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGATTTGCCTCCTACATATTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCTTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAGCTCGTTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAACTACCCACTGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTGACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATAGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTTAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGAAAAACTTGAAAGTATAAAGGCACAACTAAATGAACAGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTTCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTCGAAGATAGGTTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGAGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCGTTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGCTAGACAGTGGACACGATACTTCACCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA 2805 44.39 MMLENERLLPKSVLLELAFQQNLEELASSVPRSFSFNELGNRDNWQNRELKRERFLEFLIMAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKSSGGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVLADKLCAEAECIEKGIVDMISLHRINKLVMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSETTHWRSQSLPLEQFNSREVGTPSNVRPRGRSLLFDHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLTRRSPSERSDNSIRSPRGVIDMAPSPLSRVELCANRPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKEKLESIKAQLNEQMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPFLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1461590 1467353 - CmPI595203_05g001680.1 Cmu05g0168 415082
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0168 934 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 862 934 IPR013083 -
Cmu05g0168 934 MobiDBLite consensus disorder prediction 276 312 - -
Cmu05g0168 934 MobiDBLite consensus disorder prediction 276 317 - -
Cmu05g0168 934 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0168 934 Pfam Protein kinase domain 581 832 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0168 934 Gene3D Phosphorylase Kinase; domain 1 556 648 - -
Cmu05g0168 934 SMART serkin_6 576 841 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0168 934 ProSiteProfiles Protein kinase domain profile. 576 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0168 934 SUPERFAMILY Protein kinase-like (PK-like) 550 833 IPR011009 -
Cmu05g0168 934 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Cmu05g0168 934 ProSiteProfiles U-box domain profile. 863 934 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g0168 934 Coils Coil 446 550 - -
Cmu05g0168 934 SUPERFAMILY RING/U-box 859 934 - -
Cmu05g0168 934 Pfam U-box domain 865 934 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g0168 934 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 548 648 - -
Cmu05g0168 934 PANTHER OS02G0152300 PROTEIN 107 928 IPR051348 -
Cmu05g0168 934 CDD STK_N 105 258 - -
Cmu05g0168 934 Gene3D Transferase(Phosphotransferase) domain 1 649 847 - -
Cmu05g0168 934 SMART Ubox_2 867 930 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cmu05g0168 934 CDD RING-Ubox_WDSUB1-like 865 920 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1777 Cmu-Chr1:31483707 Cmu05g0168 Cmu-Chr5:1461590 1.70E-70 dispersed
Cmu05g0168 Cmu-Chr5:1461590 Cmu11g0163 Cmu-Chr11:2098871 2.70E-91 dispersed
Cmu05g0161 Cmu-Chr5:1397498 Cmu05g0168 Cmu-Chr5:1461590 3.20E-44 proximal
Cmu02g2012 Cmu-Chr2:33861557 Cmu05g0168 Cmu-Chr5:1461590 1.60E-132 transposed
Cmu07g0262 Cmu-Chr7:2567190 Cmu05g0168 Cmu-Chr5:1461590 3.00E-06 transposed
Cmu11g0313 Cmu-Chr11:3677060 Cmu05g0168 Cmu-Chr5:1461590 8.90E-47 wgd
Cmu05g0168 Cmu-Chr5:1461590 Cmu05g0922 Cmu-Chr5:8386021 1.10E-150 wgd
Cmu05g0168 Cmu-Chr5:1461590 Cmu06g0363 Cmu-Chr6:4177363 8.50E-231 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75498 PF00069 Pkinase 3.60E-42 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0168 - - - 0.0