Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g0168 | ATGATGTTGGAAAACGAGAGATTGCTTCCAAAATCAGTCCTGCTTGAACTTGCATTCCAACAAAATCTGGAGGAGCTCGCGTCTTCAGTTCCACGAAGTTTCTCCTTCAATGAATTGGGGAATCGCGACAATTGGCAAAACAGAGAGCTCAAGAGAGAACGATTCCTAGAGTTTCTTATCATGGCGGTTGTGAGTGCTATGCTAGCAACTACACCTCGAGCTGGTCCAATTAATTATGCTGAAGCTTCACCAATTATGATCAGCTCAAGCAGAGAGATTGTGGAAGAGCCTGTGGGAGCTATTAGTGAAGATGTAATTTGTGTTGCTGTTGGGAAAGATGTGAAAGAGTGCTTATCAGTTTTGAGATATGCACTAAAATCCTCAGGTGGGAAGAAGATTTGCCTCCTACATATTCATGTCCCCGCACAGATGATTCCATTAATGGGAACCAAGTTTCCAGCAAACTCATTGGAGAAAGAGGAGGTGAGAGCATATCATGAGTTCGAGAAGCAAAATCTGCCGAGGGTCATGAATGAGTATATTCTATACTGTCTTCAAGAAGGGGTTCTTGCCGATAAATTATGTGCTGAAGCTGAGTGTATTGAAAAGGGAATAGTTGATATGATTTCCCTGCACAGGATAAATAAGCTCGTTATGGGAGCAGCTGTAGACAAGAGTTATTCAAGGAGAATGGTGGATCTGAAGTCTAAGAAAGCCATTTACGTGCGTTCACAGGCACCGGCTTTCTGTCACATTGACTTTATTTGCAAGGGGAACCTCATCTGCACCAGGGAGGGTAGATCAGATGGAGCTCAAGTAGAAACCGTCATCTCATCACCACAAACAAGTCCAGACGCTGAATCCTCAGAAACTACCCACTGGAGATCTCAGTCACTGCCACTTGAACAGTTTAATAGCAGGGAAGTCGGAACTCCTTCCAATGTACGTCCTAGAGGGAGATCATTGCTTTTTGACCATTTTAGAGGGAGCACACTAGATCCTTCTTCTCCAGATATTATGAGTGGGGTTCATACTGCAAGAAACTTGGATGTTAACGAGGCTATGGGTGAATGGGGTTTATTAACAAGGAGAAGTCCTTCTGAAAGGTCAGACAATTCCATACGCTCTCCTCGTGGTGTGATTGATATGGCTCCGTCCCCACTTTCTAGGGTTGAGTTATGTGCAAATAGGCCGGAGGATGGGAAGACCAGTGATTGCCTTTACAATCAATGTGAACGGGTGATGATGGAGGCTGCAAATGCAAGGCGCGAAGCATTTTTAGAGGCAATTGCGCGCAGAAAATCTGAGAAAGAAACTGTTAATGCTCTACACAGGGTTAGAGCTGCAGAAGGGTTATATGCTGAAGAACTGAAACAAAGGAAGGAGGTTGAACAAGAGCTAGCGAAGGAAAAGGAAAAACTTGAAAGTATAAAGGCACAACTAAATGAACAGATGGAAGAACTCCGGATAGCCCAAGATCAGAAGGCAAGTCTAGAGAGAGATCTTTTAGAATCTGATCTAACCGCAAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGAATTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGTTGCAGATACAACGCGACAATGCACTTAGAGAAGCAGAGGAGCTTAGAAAAAATCAATCCACAGGCCAATACCTTCCGCAGTTCTTTACTGAGTTCCCTTTTCGGGAGATCGAGGAAGCAACTAAAAACTTTGATCCCTTCCTGAAGATTGGAGAAGGGGGATATGGAAGTATATTCCGAGGTAACTTGCGTCATACTATGGTGGCTATAAAAATTCTACATTCTGATAGCTCTCAAGGCCCCTCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTTGTCACGCTCATTGGTGCCTGTCCTGAAGCTTGGGTTCTCATCTACGAATACCTCTCTAATGGAAGCCTCGAAGATAGGTTAAGCTGCAAGGATAATACTCCACCTTTATCTTGGCAAACACGAATACGTATCGCTACCGAGTTATGCTCGGCCCTTATGTTTCTTCACTCAAGTAAGCCCCACAGCATCATTCATGGTGACTTGAAACCTGCAAATGTATTACTTGATGCAAATTTTGTATGCAAGCTTGGAGACTTTGGAATTTGTCGCTTATTGTCTCGGGGTGAAATGCTAAACAACGAAACACTTGTTTGGAGAACTGACAACCCCAAGGGGACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGATGTTTATTCATTCGGGATAATACTTTTGCGGTTATTGACTGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCAATGGCAAATGGAAAGTTAGAATCCATTTTGGATCCTTTAGCAGGAGATTGGCCGTTCGTGCAGGCTGAACAGATCGCTCGATTGGCATTGAGGTGTTGTGATATGAAGCGAAAGAGCCGCCCCGATCTCATTACTGATGTCTGGAGGGTGCTTGGACCAATGAGAGCTTCCTGTGGTGGCCTATTGTCCGTCCAGCTCGGTTCTGCAGAACACTCACATCCTCCCCCTTATTTTATCTGTCCCATCTTCCAGGAAGTCATGCAAGATCCACATGTAGCTGCAGATGGTTTTACATATGAAGCGGAGGCTGTGAGGGGATGGCTAGACAGTGGACACGATACTTCACCAATGACAAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAAGAGTGGCTCCAACGGAACTGA | 2805 | 44.39 | MMLENERLLPKSVLLELAFQQNLEELASSVPRSFSFNELGNRDNWQNRELKRERFLEFLIMAVVSAMLATTPRAGPINYAEASPIMISSSREIVEEPVGAISEDVICVAVGKDVKECLSVLRYALKSSGGKKICLLHIHVPAQMIPLMGTKFPANSLEKEEVRAYHEFEKQNLPRVMNEYILYCLQEGVLADKLCAEAECIEKGIVDMISLHRINKLVMGAAVDKSYSRRMVDLKSKKAIYVRSQAPAFCHIDFICKGNLICTREGRSDGAQVETVISSPQTSPDAESSETTHWRSQSLPLEQFNSREVGTPSNVRPRGRSLLFDHFRGSTLDPSSPDIMSGVHTARNLDVNEAMGEWGLLTRRSPSERSDNSIRSPRGVIDMAPSPLSRVELCANRPEDGKTSDCLYNQCERVMMEAANARREAFLEAIARRKSEKETVNALHRVRAAEGLYAEELKQRKEVEQELAKEKEKLESIKAQLNEQMEELRIAQDQKASLERDLLESDLTAKELEQKILSAVELLQSYKREREELQIQRDNALREAEELRKNQSTGQYLPQFFTEFPFREIEEATKNFDPFLKIGEGGYGSIFRGNLRHTMVAIKILHSDSSQGPSEFQQEVNVLSKMRHPNLVTLIGACPEAWVLIYEYLSNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANFVCKLGDFGICRLLSRGEMLNNETLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYAMANGKLESILDPLAGDWPFVQAEQIARLALRCCDMKRKSRPDLITDVWRVLGPMRASCGGLLSVQLGSAEHSHPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQRN | 934 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 1461590 | 1467353 | - | CmPI595203_05g001680.1 | Cmu05g0168 | 415082 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g0168 | 934 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 862 | 934 | IPR013083 | - | |
Cmu05g0168 | 934 | MobiDBLite | consensus disorder prediction | 276 | 312 | - | - | |
Cmu05g0168 | 934 | MobiDBLite | consensus disorder prediction | 276 | 317 | - | - | |
Cmu05g0168 | 934 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 694 | 706 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu05g0168 | 934 | Pfam | Protein kinase domain | 581 | 832 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu05g0168 | 934 | Gene3D | Phosphorylase Kinase; domain 1 | 556 | 648 | - | - | |
Cmu05g0168 | 934 | SMART | serkin_6 | 576 | 841 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu05g0168 | 934 | ProSiteProfiles | Protein kinase domain profile. | 576 | 868 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu05g0168 | 934 | SUPERFAMILY | Protein kinase-like (PK-like) | 550 | 833 | IPR011009 | - | |
Cmu05g0168 | 934 | ProSitePatterns | Protein kinases ATP-binding region signature. | 582 | 603 | IPR017441 | GO:0005524(InterPro) | |
Cmu05g0168 | 934 | ProSiteProfiles | U-box domain profile. | 863 | 934 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cmu05g0168 | 934 | Coils | Coil | 446 | 550 | - | - | |
Cmu05g0168 | 934 | SUPERFAMILY | RING/U-box | 859 | 934 | - | - | |
Cmu05g0168 | 934 | Pfam | U-box domain | 865 | 934 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cmu05g0168 | 934 | FunFam | Adenine nucleotide alpha hydrolase-like domain kinase | 548 | 648 | - | - | |
Cmu05g0168 | 934 | PANTHER | OS02G0152300 PROTEIN | 107 | 928 | IPR051348 | - | |
Cmu05g0168 | 934 | CDD | STK_N | 105 | 258 | - | - | |
Cmu05g0168 | 934 | Gene3D | Transferase(Phosphotransferase) domain 1 | 649 | 847 | - | - | |
Cmu05g0168 | 934 | SMART | Ubox_2 | 867 | 930 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cmu05g0168 | 934 | CDD | RING-Ubox_WDSUB1-like | 865 | 920 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g1777 | Cmu-Chr1:31483707 | Cmu05g0168 | Cmu-Chr5:1461590 | 1.70E-70 | dispersed | |
Cmu05g0168 | Cmu-Chr5:1461590 | Cmu11g0163 | Cmu-Chr11:2098871 | 2.70E-91 | dispersed | |
Cmu05g0161 | Cmu-Chr5:1397498 | Cmu05g0168 | Cmu-Chr5:1461590 | 3.20E-44 | proximal | |
Cmu02g2012 | Cmu-Chr2:33861557 | Cmu05g0168 | Cmu-Chr5:1461590 | 1.60E-132 | transposed | |
Cmu07g0262 | Cmu-Chr7:2567190 | Cmu05g0168 | Cmu-Chr5:1461590 | 3.00E-06 | transposed | |
Cmu11g0313 | Cmu-Chr11:3677060 | Cmu05g0168 | Cmu-Chr5:1461590 | 8.90E-47 | wgd | |
Cmu05g0168 | Cmu-Chr5:1461590 | Cmu05g0922 | Cmu-Chr5:8386021 | 1.10E-150 | wgd | |
Cmu05g0168 | Cmu-Chr5:1461590 | Cmu06g0363 | Cmu-Chr6:4177363 | 8.50E-231 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75498 | PF00069 | Pkinase | 3.60E-42 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g0168 | - | - | - | 0.0 |