Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0189 GGGCCAAATGTTATTGAAGAAGTTGAGAACGAGGATAACAAGGCAGTTCTAGAAATCTCTGGTGACATTGCTGTTGAAATGGATAGAGAGTTGCCACTTAGTGGTGATTCCTTAGCTATCAAATCTCTACCAGGTAGCTTTTCAGATTCTGAAGACTCTGATCAACCATATTACTTAAGTGATAGCGAGAATGGAAAATTGAGTTCAGACTCTGTGAAGGAGGTTGAATCTGGAGCAGAGAAGGCTATTTTGAGTCAAACAAAAAAGCAGGAAACACAGAAGGATTTGACCAGAGAAGGCTCACCTTTAAACTCCCCCAAGGCTCTATTGAAAAAATCTTCTCGCTTTTTTTCAGCATCATTCTTCTCCTTTACAGTTGATGGGACAGAGTTCACTCCAGCATTAGTCTTCCAGGGTCTCCTGGATTTCACTAAAAAGCAATTGCCGAAGCTAATTGTTGGAGCAGTTCTATTAGGAGCAGGGATTGCTATCTTTGCAAATCGAGCAGAAAGGAATTCTCAGATGATTCAGCAGCCTGATGTTGTCACCACTAGCACTGATGAAGTTTCCTTGAACACAAAGCCTTTATTTCAACAATTAAGGAAACTTCCGAAAAGAGTGAAAAAATTAATTTCACAGCTTCCCCATCAAGAGGTGAATGAAGAGGAGGCTTCACTCTTAGACATGTTATGGTTGTTGCTTGCTAGTGTTATATTTGTGCCAACATTTCAGAAACTTCCTGGAGGAAGTCCTGTCCTTGGGTACTTGGCTGCTGGTATTTTAATTGGGCCATATGGTCTCTCCATAATCCGTCACGTGCATGGAACCAAAGCGATTGCTGAATTTGGAGTTGTTTTTCTCCTGTTCAACATTGGCCTGGAGTTATCAGTTGAGAGGCTAAGTTCCATGAAGAAATATGTTTTTGGGTTAGGGTCTGCACAGGTTTTGGTTACAGCTGTAGTGGTTGGCTTGGTTGCTCACATTGTCTGTGGGCAGGCTGGCCCAGCTGCAATTGTCATTGGAAATGGATTGGCTTTGTCATCCACTGCTGTTGTCCTTCAGGTGTTGCAAGAGCGAGGTGAGAGCACTTCACGGCATGGGCGTGCTACATTTTCTGTCTTACTATTCCAGGATTTGGCCGTTGTGGTTTTGCTGATTCTTATACCTCTAATTTCACCTAATTCATCCAAAGGAGGGATTGGTTTTCAAGCCATTGCTGAAGCTCTTGGCCTGGCTGCTGTGAAGGCAATAGTTGCTATTTCTGCCATAATAGCTGGTGGGCGCCTGCTACTACGACCAATTTATAAACAAATAGCTGAAAATCAAAATGCAGAAATATTCTCTGCCAACACACTACTTGTCATTCTGGGAACAAGTCTACTTACTGCCAGGGCTGGACTATCAATGGCGCTGGGTGCTTTTCTAGCAGGTTTACTTCTAGCAGAAACGGAATTCTCCTTGCAGGTTGAATCTGATATTGCTCCATATCGTGGCCTTCTATTGGGTCTCTTCTTCATGACGGTTGGGATGTCTATCGATCCAAAACTTCTTCTTTCTAACTTTCCAATTATCATGGGGTCTTTGGGACTTCTTATTGGTGGCAAGACTATATTGGTTGCCTTGGTTGGTAGATTTTTTGGTATCTCAATTATATCTGCGTTAAGAGTTGGGCTGCTTCTTGCTCCTGGTGGAGAATTTGCTTTTGTGGCGTTTGGTGAAGCTGTCAATCAGGGTATAATGTCTTCTCAACTATCCTCTTTATTATTTCTTGTTGTGGGACTTTCAATGGCCCTTACACCGTGGCTAGCTGCTGGCGGTCAGTTAATTGCTTCTCGATTTGAGCAGCATGATGTTCGGAGTTTATTACCTGTTGAAAGTGAGACCGACGATTTGCAAGATCATATCATTATTTGCGGATTTGGACGAGTTGGTCAGATAATAGCCCAGCTTCTGTCAGAGCGACTGATTCCCTTTGTTGCCCTTGATGTGAGGAGTGATAGAGTGGCCGTAGGACGTGCCTTAGACCTTCCTGTGTATTTTGGAGATGCAGGAAGTCGAGAGGTTCTACATAAAGTTGGTGCTGAAAGGGCATGTGCTGCTGCAATAACACTGGATACACCGGGTGCAAATTACAGAACTGTTTGGGCTTTGAGCAAGTATTTCCCTAATGTTAAGACTTTTGTTCGAGCTCATGATGTTGATCACGGCCTTAATTTAGAGAAGGCTGGTGCTACTGCGGTAGTTCCCGAGACGTTGGAACCGAGCTTACAGTTGGCTGCTGCGGTTCTTGCTCAGGCTAAACTACCCATGTCAGAGATTGCTGCAACAATTAACGAGTTTAGGTCCCGACATTTATCTGAGCTGACTGAGCTATGTGAAGCCAGTGGAAGTTCGCTCGGATACGGGTTTTCTCGAATCATGAGCAAACCAAAAGTTCAAACCTCTGATTCTTCAGATGAGAATCAACCACCCCGCCCCCTCAATTCTCACTCTCAAGAGTCCCGCGCCGCCACTTCTCCGCCGTACTCTCCGCCGTCCTCTACGTCGGTGCTGCTCCTCATCCGCTCTGTACCTCTATTATTCCTTATTCTTAGCAGAACGTGCAGAATTTTCTTACGCCATTTTCTAATGGCGTCGTCGATGAAATTCACAGATTGCTCCCCTTCCGCAACTGTTCGTCTTTGCCCCTCTACTCGAACCAGGCCTCGAAGCTCCGATGGCGCTGTTCTCTTTCACCGTCTTCTTGGCCTTTCGCGCCCTGCCTTTCCTAGAACTTTCGTTTCTCGCTCTTCGACTTCAACTTTGCCCGTCATCTCTGCTTCAATTTCAACCGACGCAACTGCAGAAGTGATTGATGGAAAATTAGTGGCGAAGCAGATTAGAGAGGAGATTACTGCTGAAGTATCACGAATGAAGGAGGCCATTGGTGTTGTTCCAGGCTTAGCAGTCATCCTTGTTGGAGATAGGAAGGATTCTGCAACTTATGTACGAAATAAGAAAAAAGCTTGTGAATCTGTGGGTATTAAATCTTTTGAAGTAAACTTACCTGAAGATTGTACTGAGCAAGAAGTACTCAAGTATGTATCCGACTTCAATGATGATCCATCTGTCCATGGAATCCTTGTTCAGTTACCTTTACCTAAACATATGAACGAACAGAATATATTGCATGCTGTTAGCATTGAGAAAGATGTAGATGGATTTCACCCACTAAACATCGGTCGTCTTGCAATGAGAGGAGAAGAACCATTGTTTGTTCCATGTACGCCAAAAGGGTGTATTGAATTGCTGCATAGATATAACATTAGTATCAAAGGGAAGAGAGCTGTTGTAATTGGTCGAAGCAATATTGTAGGAACTCCAGCTGCTTTTTTGCTTCAAGGAGAAGATGCAACAGTGAGCGTTGTTCATTCTAGGACCAAAGACCCTGAAGAGTTAACAAGACAGGCTGATATCATCATCTCTGCAGTTGGCAAAGCCAATATGGTTAAGGGCAGTTGGATAAAGCCTGGAGCAGTTATTATCGACGTTGGAATTAATCCAATAGAGGATGCAAGTAGTCCTCGTGGGTATCGGCTAGTAGGAGATGTTTGTTATGAGGAGGCCAGCAAAATTGCTTCAGCCATTACTCCTGTACCTGGGGGAGTTGGGCCGATGACGATAGCGATGCTGCTCTCCAACACACTTACAGCAGCCAAAAGAACACATAACTTCCACTGGATGGAAATGAATTTTGCAGCTATTGATTTCTCGTTGTCCTACCATATTTCGGCAGAAAAGGTAATGAACAGTAAATGGGCAGAACGATGCACTCGATGCAAAGTGACTAATGGTCTATGCAACCGTTTCACACAGCTAGGAAATTCACCAGCAAGTTCGTTCACAGTAGAGAAAAGAACACTTCAGGATATGCTCCACGGCTATTTACTCCTCTAA 3936 44.11 GPNVIEEVENEDNKAVLEISGDIAVEMDRELPLSGDSLAIKSLPGSFSDSEDSDQPYYLSDSENGKLSSDSVKEVESGAEKAILSQTKKQETQKDLTREGSPLNSPKALLKKSSRFFSASFFSFTVDGTEFTPALVFQGLLDFTKKQLPKLIVGAVLLGAGIAIFANRAERNSQMIQQPDVVTTSTDEVSLNTKPLFQQLRKLPKRVKKLISQLPHQEVNEEEASLLDMLWLLLASVIFVPTFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSAQVLVTAVVVGLVAHIVCGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGIGFQAIAEALGLAAVKAIVAISAIIAGGRLLLRPIYKQIAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPIIMGSLGLLIGGKTILVALVGRFFGISIISALRVGLLLAPGGEFAFVAFGEAVNQGIMSSQLSSLLFLVVGLSMALTPWLAAGGQLIASRFEQHDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDTPGANYRTVWALSKYFPNVKTFVRAHDVDHGLNLEKAGATAVVPETLEPSLQLAAAVLAQAKLPMSEIAATINEFRSRHLSELTELCEASGSSLGYGFSRIMSKPKVQTSDSSDENQPPRPLNSHSQESRAATSPPYSPPSSTSVLLLIRSVPLLFLILSRTCRIFLRHFLMASSMKFTDCSPSATVRLCPSTRTRPRSSDGAVLFHRLLGLSRPAFPRTFVSRSSTSTLPVISASISTDATAEVIDGKLVAKQIREEITAEVSRMKEAIGVVPGLAVILVGDRKDSATYVRNKKKACESVGIKSFEVNLPEDCTEQEVLKYVSDFNDDPSVHGILVQLPLPKHMNEQNILHAVSIEKDVDGFHPLNIGRLAMRGEEPLFVPCTPKGCIELLHRYNISIKGKRAVVIGRSNIVGTPAAFLLQGEDATVSVVHSRTKDPEELTRQADIIISAVGKANMVKGSWIKPGAVIIDVGINPIEDASSPRGYRLVGDVCYEEASKIASAITPVPGGVGPMTIAMLLSNTLTAAKRTHNFHWMEMNFAAIDFSLSYHISAEKVMNSKWAERCTRCKVTNGLCNRFTQLGNSPASSFTVEKRTLQDMLHGYLLL 1311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1620496 1637779 + CmPI595203_05g001890.1 Cmu05g0189 415103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0189 1311 ProSiteProfiles RCK N-terminal domain profile. 634 756 IPR003148 GO:0006813(InterPro)
Cmu05g0189 1311 MobiDBLite consensus disorder prediction 810 843 - -
Cmu05g0189 1311 MobiDBLite consensus disorder prediction 44 66 - -
Cmu05g0189 1311 MobiDBLite consensus disorder prediction 44 71 - -
Cmu05g0189 1311 Gene3D - 630 794 - -
Cmu05g0189 1311 FunFam K(+) efflux antiporter 2 chloroplastic 222 608 - -
Cmu05g0189 1311 Gene3D Leucine Dehydrogenase, chain A, domain 1 953 1230 - -
Cmu05g0189 1311 FunFam Bifunctional protein FolD 953 1093 - -
Cmu05g0189 1311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 631 773 IPR036291 -
Cmu05g0189 1311 Hamap Bifunctional protein FolD [folD]. 948 1236 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1055 1076 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1151 1180 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1192 1208 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1020 1047 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 979 1001 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1209 1227 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PRINTS Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 1102 1122 IPR000672 GO:0004488(InterPro)
Cmu05g0189 1311 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 71 822 - GO:0009507(PANTHER)|GO:0015386(PANTHER)|GO:0016020(PANTHER)
Cmu05g0189 1311 Pfam TrkA-N domain 635 748 IPR003148 GO:0006813(InterPro)
Cmu05g0189 1311 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 948 1067 IPR046346 -
Cmu05g0189 1311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1068 1234 IPR036291 -
Cmu05g0189 1311 FunFam K(+) efflux antiporter 2 chloroplastic 630 794 - -
Cmu05g0189 1311 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 951 1066 IPR020630 GO:0004488(InterPro)
Cmu05g0189 1311 Gene3D - 222 610 IPR038770 -
Cmu05g0189 1311 Pfam Sodium/hydrogen exchanger family 236 603 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cmu05g0189 1311 Pfam Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 1069 1235 IPR020631 GO:0004488(InterPro)
Cmu05g0189 1311 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 233 513 IPR004771 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)
Cmu05g0189 1311 MobiDBLite consensus disorder prediction 85 104 - -
Cmu05g0189 1311 CDD NAD_bind_m-THF_DH_Cyclohyd 1061 1233 IPR020631 GO:0004488(InterPro)
Cmu05g0189 1311 Gene3D - 951 1212 - -
Cmu05g0189 1311 ProSitePatterns Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 1213 1221 IPR020867 GO:0003824(InterPro)
Cmu05g0189 1311 FunFam Bifunctional protein FolD 1085 1212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0554 Cmu-Chr4:18906142 Cmu05g0189 Cmu-Chr5:1620496 8.20E-116 dispersed
Cmu05g0189 Cmu-Chr5:1620496 Cmu10g1850 Cmu-Chr10:23391004 5.30E-106 dispersed
Cmu05g0189 Cmu-Chr5:1620496 Cmu08g1635 Cmu-Chr8:28037551 2.40E-37 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0189 K03455 - csv:101213081 1421.76