Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0199 ATGCGTGATTCGATCCCACACTCCTCTACTCCCTTCCGAGCGGTGGATAATTCGCCTCTGCTTGGCCACTCCGTCACCGATGGCCTTTTCCGTTCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCCCTTCGAGGTGCTGTTCGTCTTCTCCGCCGCGCAAGTGGCCGCCAGATGATGCTCCGGGAGCCTTCTGTTCGGGTTCGTGAGACCGCCGCCGAGCAGCTCGAGGAGCGCCAGAGCGATTGGGCGTACTCCAAGCCCATTATTCTTCTGGACCTTCTATGGAATTTGGCCTTCGTCATCATTAGTTTCACTGTTCTAGGGCTCAGCACGAGGGAAAGTCCTTCAGTTCCTCTCAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCTGTTGAGTATAAGCGTCGGCGCTCGACAAGAGAGCCTGTTGGATTGGACCGTACCGGTGGTTGGACGAGCAGCGAGGATTCGAATTCGGTCTCTGGAAGTGATGGAGATGATTATGCGACAGAGGTCACCGTGAATGAAGAAGAATCTAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACAATGTTCTCTTTCATCTGGTGGCTGTTGGGCTTTTATTGGGTAACTGCTGGAGGCCAAGAATTGATAGAGGGTTCACCTCAGTTATACTGGCTTTGTATTACATTCCTTGCTTTTGATGTCGTATTTGTCCTAATTTGCGTTGCAATTGCATGTCTTGTTGGCATTGCTATTTGCTGCTGTCTGCCTTGCATCATTGCCATCTTGTATGCAGTTACCGATCAGGAAGGAGCTACAAAGGAAGAGATCGAGCGCCTACCCAAGTACAAATTTAACAAAACGGGTGATGTTGAGAAAGTGAATGGTGATATTCAGGAATCTGGTGGAGGAATAATGACTAACTGTGACAACGAAGCACCTACAGAGCGTTTTCTTCGCCCTGAAGATTCTGAATGTTGCATCTGCCTCTCTGCTTACGAGAACGGAGCGGAGCTACGAGAACTTCCCTGTAACCACCATTTTCACTGCAACTGCATCGACAAATGGCTGCACATGAATGCCACCTGCCCGCTCTGCAAGTTCAACATCTTGAAGCCAGACAGTTCCAGTAGCGAAGAAATATCATCACAACTCTTCAGGAATTGCACCAGCCGGGAATCGAACCCGGGTCTGTACCGTGGCAGGGTACTATTCTACCACTAG 1236 49.43 MRDSIPHSSTPFRAVDNSPLLGHSVTDGLFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLREPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLAFVIISFTVLGLSTRESPSVPLRFWIIGYALQCIIHMSCVAVEYKRRRSTREPVGLDRTGGWTSSEDSNSVSGSDGDDYATEVTVNEEESSNLVKHIESANTMFSFIWWLLGFYWVTAGGQELIEGSPQLYWLCITFLAFDVVFVLICVAIACLVGIAICCCLPCIIAILYAVTDQEGATKEEIERLPKYKFNKTGDVEKVNGDIQESGGGIMTNCDNEAPTERFLRPEDSECCICLSAYENGAELRELPCNHHFHCNCIDKWLHMNATCPLCKFNILKPDSSSSEEISSQLFRNCTSRESNPGLYRGRVLFYH 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1678462 1681228 - CmPI595203_05g001990.1 Cmu05g0199 415113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0199 411 Pfam Ring finger domain 329 371 IPR001841 -
Cmu05g0199 411 MobiDBLite consensus disorder prediction 150 176 - -
Cmu05g0199 411 SUPERFAMILY RING/U-box 319 377 - -
Cmu05g0199 411 CDD RING-H2_PA-TM-RING 329 371 - -
Cmu05g0199 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 379 IPR013083 -
Cmu05g0199 411 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Cmu05g0199 411 PANTHER TARGET OF ERK KINASE MPK-1 45 376 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cmu05g0199 411 SMART ring_2 330 370 IPR001841 -
Cmu05g0199 411 MobiDBLite consensus disorder prediction 158 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0199 Cmu-Chr5:1678462 Cmu10g1184 Cmu-Chr10:4516008 3.70E-122 dispersed
Cmu05g0199 Cmu-Chr5:1678462 Cmu07g1486 Cmu-Chr7:30021457 7.00E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0199 - - - 0.0