Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0200 ATGAGTTTTCTACCACGATTCCACTCTAGCGGCGCCGGCGGGGGAAACGGTGACGGCGACGGCGACGGAAGTCTTATGGCCGCTGGTGCTATTGCTCAGCCACATCTTATTACTCAATCTTCTTTCACTAAATCAATGTTCTCTTCCCCAACGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCGTCGGGGAGATGGTTGCGGCGGATGTTAGGAGGAGGAGTAGAGAGGAAGAGGCAGCGGAGAGTAGATCTGGGAGCGAGAACATGGACGGTGGTTCCGGCGAGGAAGTGGAGGGCGGCGGTGGTAGGAAGAAGAGGAAGAAACGGTACCACCGTCACAGTGTGGAACAGATCCAAGAACTGGAAGCTATGTTTAAAGAGTGTCCTCATCCTGATGAAAAACAACGATTGGAGCTCAGTAGAAGACTCTCTTTAGAAACAAAACAAGTTAAATTCTGGTTTCAAAATCGTCGAACTCAAATGAAGACTCAACTGGAACGCCATGAGAACACATTACTAAGACAAGAGAATGAGAAGCTCCGAACAGAGAATATGGCAATTCGAGAGGCCATGAGGGAACCAATTTGCTCCAACTGCGGTGGACCGGCCATCATCGGAGAAATCTCCATCGAAGAACAGCAACTCAGAATCGAAAATGCCCGATTAAAGGACGAATTGGACCGAGTGTGTGCCCTAGCGGGGAAATTCCTGGGGCGGGCAGCAGTTCCGGTATCGCCGCCATTGGCATCAAGCTCGTGTTTGGAGGAATATGGAGGTGGGATGATGATGATGGAGAGATGCGTGTATTTGGAGATGGGTTTGGCAGCCATGGATGAGATTGTGAAAATGGCTAATGAGGAAGAGCCATTGTGGGTTAGGGAGAAACTGAATGAAGAAGAATATTTGAGAATGTTCAGTGGGAGTTGTTTTGGGGTTAAACACATTAATAATGGGTTTGTTTTTGAGGCTTCTAGACAAACTGCTCTTGTCTTCCTCAACACTTCTGCTCTCCTTGACACTCTCATGGATCCTGACCGGTGGGTGGAGATGTTTCCGAACCTGGTCGCGACGGCAAGCACCACCGACGTAATCTCTGGTGGCATGGGAGGAACCAGGAACGGAGCTCTCCAGCTGATGCATGCAGAGCTTCAAATTCTGTCTCCCATGGTTCCGGTGAGACAATTAAGCTTCCTCCGCTTCTGTAAGCAGCACGCTGAAGGCGTTTGGGTTGTCGTCGATGTCTCCATCGATCCCATTACCGATACTTCTTCCTCTCCGCCGTGCCGGAGACTCCCCTCCGGCTGCCTCATCCACGAGATGCCCAATGGCTACTCCAAGGTTACTTGGGTTGAGCATTCTGAATACGATGAAAGTTACATTCACGAGCTATACCGGCCCCTCATTCGCTCCGGCCTTGGCTTTGGTGCACCACGGTGGATCGCCACGCTCCAACGCCAATCTGAGTGCCTTGCCATCCTCTCCACCCCGATAGACTATTCTGGAATATCAACGAATGGGCGGCGGAGCATGGTGAAGCTAGCGCAGCGGATGACGGTGAATTTTTGTGCAGGAATATGTGGGTCGACTATATACAAATGGAACAAGCTAAACACGAGAAATAACAACGTTGGAGAAGATGTGAGAGTGATGACGAGGAAGAGTGTGGAGGATCCCGGGGAGCCACCGGGGACAGTGCTGAGTGCAGCGACGTCGGTGTGGGTGGCGGAAGCGGCGGAGAGAGTGTTTGAGTTTCTTCGGGATGAGCGGCTGAGGAGTGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAGATGCTTCATATTCCCAAATCCCAACACCATCACCATCCCAACGCCGTCTCTCTCCTCCGTGCCACCTCTCTAAATCCAAATCAGAGCAGCATGCTAATTCTACAAGAGACTTGCACCGATGCATCGGGATCGCTTGTAGTGTACGCGCCGGTGGACATTCCGGCCATGCAGGCGGTAATGAACGGTGGAGATTCAGCATACGTGGCCTTACTACCGTCGGGGTTCGCGGTGGTTCCGGCGGCGGAGGACGGTGGCGGAGGGAGCCTGTTGACGGTGGCGTTTCAGATACTGGTGAATAGTTTGCCGACGGATAAGCTGACGGTGGAGTCGGTGGAGACGGTGAATAACTTGATTTCGTGTACGGTGCAAAAAATTAAAACCGCTCTCCGGTGTCACGCGCCTTCCACGTGA 2232 52.37 MSFLPRFHSSGAGGGNGDGDGDGSLMAAGAIAQPHLITQSSFTKSMFSSPTLSLALTNIDGLGVGEMVAADVRRRSREEEAAESRSGSENMDGGSGEEVEGGGGRKKRKKRYHRHSVEQIQELEAMFKECPHPDEKQRLELSRRLSLETKQVKFWFQNRRTQMKTQLERHENTLLRQENEKLRTENMAIREAMREPICSNCGGPAIIGEISIEEQQLRIENARLKDELDRVCALAGKFLGRAAVPVSPPLASSSCLEEYGGGMMMMERCVYLEMGLAAMDEIVKMANEEEPLWVREKLNEEEYLRMFSGSCFGVKHINNGFVFEASRQTALVFLNTSALLDTLMDPDRWVEMFPNLVATASTTDVISGGMGGTRNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWVVVDVSIDPITDTSSSPPCRRLPSGCLIHEMPNGYSKVTWVEHSEYDESYIHELYRPLIRSGLGFGAPRWIATLQRQSECLAILSTPIDYSGISTNGRRSMVKLAQRMTVNFCAGICGSTIYKWNKLNTRNNNVGEDVRVMTRKSVEDPGEPPGTVLSAATSVWVAEAAERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKSQHHHHPNAVSLLRATSLNPNQSSMLILQETCTDASGSLVVYAPVDIPAMQAVMNGGDSAYVALLPSGFAVVPAAEDGGGGSLLTVAFQILVNSLPTDKLTVESVETVNNLISCTVQKIKTALRCHAPST 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1686371 1691240 - CmPI595203_05g002000.1 Cmu05g0200 415114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0200 743 MobiDBLite consensus disorder prediction 1 21 - -
Cmu05g0200 743 Coils Coil 207 227 - -
Cmu05g0200 743 MobiDBLite consensus disorder prediction 73 115 - -
Cmu05g0200 743 Pfam START domain 276 490 IPR002913 GO:0008289(InterPro)
Cmu05g0200 743 SMART START_1 273 491 IPR002913 GO:0008289(InterPro)
Cmu05g0200 743 Gene3D - 271 490 IPR023393 -
Cmu05g0200 743 ProSitePatterns 'Homeobox' domain signature. 141 164 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cmu05g0200 743 SUPERFAMILY Bet v1-like 268 491 - -
Cmu05g0200 743 SMART HOX_1 107 170 IPR001356 GO:0003677(InterPro)
Cmu05g0200 743 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 738 IPR042160 -
Cmu05g0200 743 SUPERFAMILY Bet v1-like 509 726 - -
Cmu05g0200 743 FunFam Homeobox-leucine zipper protein HDG1 96 182 - -
Cmu05g0200 743 Pfam Homeodomain 109 164 IPR001356 GO:0003677(InterPro)
Cmu05g0200 743 ProSiteProfiles START domain profile. 264 494 IPR002913 GO:0008289(InterPro)
Cmu05g0200 743 Gene3D - 101 183 - -
Cmu05g0200 743 CDD homeodomain 113 166 IPR001356 GO:0003677(InterPro)
Cmu05g0200 743 CDD START_ArGLABRA2_like 272 490 - -
Cmu05g0200 743 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Cmu05g0200 743 Coils Coil 160 195 - -
Cmu05g0200 743 ProSiteProfiles 'Homeobox' domain profile. 106 166 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0200 Cmu-Chr5:1686371 Cmu09g1115 Cmu-Chr9:11577959 9.60E-145 dispersed
Cmu05g0200 Cmu-Chr5:1686371 Cmu05g0894 Cmu-Chr5:8130458 5.20E-215 wgd
Cmu05g0200 Cmu-Chr5:1686371 Cmu06g0005 Cmu-Chr6:97544 3.70E-269 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6089 PF01852 START 8.00E-47 CL0209 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0200 K09338 - csv:101222248 941.799