Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0231 ATGGAGAGCAATCCAGCCGCCTCCCCCGTCGTCGTTAGCAATACCCCAAGCATCCCGCCGGAGAAACGTAACCGTTCCATCTTCGACGTCCCGGCCGACTTCTTTGATTCCTGCAAACTCCTTCGTTCTCCACACTCATACACCTCATCAACCAGCGGCAGCAACAGGGACAGCTCAAGCGCAGAAAACACAGTCGATTCGGAGCAGAACTACAGGGATTTGAAAGAAAGTCCCGTCGCCCACCGATGGACCTGCAACACATGCAAGGCCGAGTTCGAGTCCCTGCTTGACCAGCGTTCGCACTTCAAATCCGACCTTCACCGGTTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGACGAAACAGAGAAGGAGGTTAATTTTCGGAATGAAGGGCCTAAGGGAACAAGTGATACTGCGAACAAGAAGAGGTTGTTTGTTCATCTTCAAACCGGTGAAAGAGCTTCGGTCTGGAAGTGTTTGCTCATAAATGAGTCAGATAATATTTCATACGAAGATGATAAAACATCAATCAGTGGTAATGGCGTTCATGCCCAGTACCTTAGAGAGAATGAAATCATAGCAAGATTAAAATATTTAAATCATGAGCCAAGAGATGGCTCCCATTTGCGGATAGTGTTGCTTGCAAGTGGTGGGCACTTCGCGGGTTGTGTCTTCGATGGAAACATAGTTGTAGCTCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAGTCTGGAAAGAAACAGTCATCAAAAGATGCAAGTGGCAAATCAATCAGTTCCGCTGGGGCTTCACTTCGTCGTCATAATGAACTGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCTGCTTGGAAGTCCTACTTTAATGCTTCATCTTGCGTTTATATTTATGCTCCTTCAAACAATCGGCAATTGCTTTTTAATGGAGACAAGCCTTACTTTAGTGATCAGCATGCTGCTGTTCGGAATATTCCTTTGACTGTTCGAAGGCCTACATTGAAAGAAGCTCGGCGTGTTTATGAACAATTGGTGCAAGTAGTGTATGAAGTAGATGAGAATGAAATATTGTCTACCACTGAGCATGATTCACTATTAAGCGCAGTTACAACGGACAATGGCACCCGAGGTATAAGTGGACAGGAAGTAATTGGAGATTTGGAGAAGGATGCTTGTACACATCTTGAAGAATCTGTTGAACACCCCAAAACTAGTGAGAGTGAAAGTGAAGTTATTTGTAGAACTACACCTTTACATGAAGCATCACAGTCTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGATGAAAGAGGACGTACTCCTTATATGCTAGCAAGCGAGAAGGAAGTCCGAAATAACTTTAGAAGGTTCATGGCTTCAAACCTTGATAAGTGGGATTGGAATGCTGCTAAGGTGCCGAGCGCATTAACCAAGGAAATGGAGGAATCTCAAGCAGCTAAGCAGGCTGAAAAAGATGCCAAGCGAAAGGCTAGAGCAAAGGAGTTGAAAAAATTAAAGAAAGAAAAGGCCAAGAAAGCACAGGCCCTGGATGCTGAATCCCAAAAGGCTGTGAAGCCGGAACAGAGTAGAGGAATCGGCTCTATTTTGAATTCTCGGGCTGAATCAACCAGTGGGAAACTGATTACCAAAGAGATGGCACAGGCTGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAGAAGAATGGCAGCCATGGTCGCAGCTGCAGCCACCAACAATTCCTCGTTGACTACTCCTAACAGCTCGCAGACTAAAAGCGGGTTGGCAGGGGATGTCAACTGCTCCTGCTGCGATACTTCGCTGGCCGGTAAAGTTCCTTTCCACCGTCTGTTACTTTGCACACAAATCTCGGGGACATCAAGTGCGAGATTTTTTGCGATGAAGTCCCCAAGTCTGCCGAGGCAAGTTCTTCGCTCGTCTTTTCTGCTATTAATTTTACTCCATGTTGCGATAATCGTTCTAGTTTATGCAAGAAGTTATTGCCTACTATTAAGTGGTAATTTGATTTCCTCATCCTTCATATCCGCCAAGATGATCAGCTTAGATTTTCATGGTGCTTTTGCAACCACTCCATTTCTGAAAGGGCCGTCTGCAATTGCACTTGATTGGAAGTTATACAAAACCTCGAGCGCGCAGCTTTTGCTGATTGTTAGAGATGTTATTAGTGAAGTCTATCTACTATCTGTTTGTAACTTTTTGGCACTGTGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGCAATATCAAAGGTTTTATGATACAAGGTGGAGACCCAACCGGCACGGGAAAAGGGGGAACCAGCATATGGGGCAAGAAGTTTAATGACGAGATAAAAGAGTCACTCAAGCACAATGCAAGAGGGATATTATCAATGGCTAATAGTGGCGCAAATACGAATGGAAGCCAATTTTTTATAACTTATGCAAAGCAGCCACATTTAAATGGATTATATACTGTTTTCGGTAGAGTGATTCATGGGTTCGAAGTACTTGATATCATGGAAAAGACACAAACTGGACCGGGTGATCGTCCTCTTGCAGAGATCAGGCTCAATCGAGTGACGATACACGCTAATCCTCTTGCAGGCTAA 2727 44.3 MESNPAASPVVVSNTPSIPPEKRNRSIFDVPADFFDSCKLLRSPHSYTSSTSGSNRDSSSAENTVDSEQNYRDLKESPVAHRWTCNTCKAEFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEVNFRNEGPKGTSDTANKKRLFVHLQTGERASVWKCLLINESDNISYEDDKTSISGNGVHAQYLRENEIIARLKYLNHEPRDGSHLRIVLLASGGHFAGCVFDGNIVVAHKTFHRYVVRAKSGKKQSSKDASGKSISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGDKPYFSDQHAAVRNIPLTVRRPTLKEARRVYEQLVQVVYEVDENEILSTTEHDSLLSAVTTDNGTRGISGQEVIGDLEKDACTHLEESVEHPKTSESESEVICRTTPLHEASQSGNADKVLELLEQGLDPCIKDERGRTPYMLASEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKDAKRKARAKELKKLKKEKAKKAQALDAESQKAVKPEQSRGIGSILNSRAESTSGKLITKEMAQAAEREKRAAAAERRMAAMVAAAATNNSSLTTPNSSQTKSGLAGDVNCSCCDTSLAGKVPFHRLLLCTQISGTSSARFFAMKSPSLPRQVLRSSFLLLILLHVAIIVLVYARSYCLLLSGNLISSSFISAKMISLDFHGAFATTPFLKGPSAIALDWKLYKTSSAQLLLIVRDVISEVYLLSVCNFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIKESLKHNARGILSMANSGANTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGPGDRPLAEIRLNRVTIHANPLAG 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1949515 1958455 + CmPI595203_05g002310.1 Cmu05g0231 415145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0231 908 MobiDBLite consensus disorder prediction 1 21 - -
Cmu05g0231 908 ProSiteProfiles Ankyrin repeat region circular profile. 441 473 - -
Cmu05g0231 908 MobiDBLite consensus disorder prediction 141 158 - -
Cmu05g0231 908 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 654 IPR047139 GO:0030433(PANTHER)
Cmu05g0231 908 MobiDBLite consensus disorder prediction 140 166 - -
Cmu05g0231 908 SUPERFAMILY Ankyrin repeat 443 495 IPR036770 -
Cmu05g0231 908 CDD Cyclophilin_PPIL3_like 775 901 - -
Cmu05g0231 908 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 861 876 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu05g0231 908 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 790 802 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu05g0231 908 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 833 848 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu05g0231 908 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 848 860 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu05g0231 908 ProSitePatterns Zinc finger C2H2 type domain signature. 85 107 IPR013087 -
Cmu05g0231 908 Gene3D - 415 547 IPR036770 -
Cmu05g0231 908 MobiDBLite consensus disorder prediction 45 73 - -
Cmu05g0231 908 MobiDBLite consensus disorder prediction 1 24 - -
Cmu05g0231 908 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 760 901 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu05g0231 908 SUPERFAMILY Cyclophilin-like 767 904 IPR029000 -
Cmu05g0231 908 MobiDBLite consensus disorder prediction 520 534 - -
Cmu05g0231 908 Pfam Bacteroidetes VLRF1 release factor 239 375 IPR041175 -
Cmu05g0231 908 Gene3D - 764 908 IPR029000 -
Cmu05g0231 908 Coils Coil 517 559 - -
Cmu05g0231 908 ProSiteProfiles Ankyrin repeat profile. 441 473 IPR002110 GO:0005515(InterPro)
Cmu05g0231 908 MobiDBLite consensus disorder prediction 515 567 - -
Cmu05g0231 908 MobiDBLite consensus disorder prediction 45 67 - -
Cmu05g0231 908 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 773 900 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Cmu05g0231 908 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 785 802 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0231 Cmu-Chr5:1949515 Cmu10g2603 Cmu-Chr10:32822235 1.80E-36 dispersed
Cmu05g0231 Cmu-Chr5:1949515 Cmu01g1704 Cmu-Chr1:30765131 7.10E-41 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0231 K26089 - csv:101216211 1009.21