Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0237 ATGGATCGAGCCACCGCCGCACGCGGCCGTCCGCTTCCGCCGCCGTTCATTTCAAGAAACCTCCATCTCAATCCCCACCACCATTTCCTCCACCAAAACTCCGATCAACAGCACAATGGAAATAGTAGCTCCGGCGGCGACGGCGGCCGAGACGGTGAGGTCTTGAGACGACCACGAGGCCGCCCCGCCGGGTCGAAGAACAAGCCGAAGCCGCCGATGATAATCACACGTGATAGCGCCAACGCACTCCGGTGCCACGTCATCGAAATCGCCAACGCCAATGACGTGATCGAAACCCTCACGATTTTCGCACGAAAGCGCCAGCGTGGCATTTGCGTGCTGACCGGCGCCGGAGCGGTCACCAACGTCATCCTCAAGCAGCCGGGGGCCGCGGTCGCCGCCGCTGGACCGGTGATCTCTCTGCCGGGGAGATTTGAGATTCTGTCGTTGTCGGGGTCGTTTCTGCCGCCGCCAGCGCCGGCGGCGGCGTCTGGGCTGACCGTGTACTTGTCCGGCGGGCAGGGGCAGGTGGTAGGAGGAAGCGTGGTGGGCCCACTTTTGAGTTCGGGGCCAGTGGTGATTACGGCTGCTTCATTCGGAAACGCAGCGTACGAGAGGCTACCGGTGGAGGATGACGACGTGGAAGCGGCAACAGCGGCGGATGCCGGAAGTAGTCCGATCAGGTCACCGGAAAACGCCGTGCAACAGCAACAATTTTTGCCGGAACTTCATGGATTGGCGCCGCATCTAATGAACACGTGTCAATTGCCGACGGAACCCTACTGGAGCACAGGTCGCACTCCACCATTTTAG 813 61.38 MDRATAARGRPLPPPFISRNLHLNPHHHFLHQNSDQQHNGNSSSGGDGGRDGEVLRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANANDVIETLTIFARKRQRGICVLTGAGAVTNVILKQPGAAVAAAGPVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLSSGPVVITAASFGNAAYERLPVEDDDVEAATAADAGSSPIRSPENAVQQQQFLPELHGLAPHLMNTCQLPTEPYWSTGRTPPF 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2007412 2008224 - CmPI595203_05g002370.1 Cmu05g0237 415151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0237 270 MobiDBLite consensus disorder prediction 1 74 - -
Cmu05g0237 270 FunFam AT-hook motif nuclear-localized protein 83 215 - -
Cmu05g0237 270 Gene3D - 83 218 - -
Cmu05g0237 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 225 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Cmu05g0237 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 199 IPR005175 -
Cmu05g0237 270 CDD DUF296 84 155 IPR005175 -
Cmu05g0237 270 ProSiteProfiles PPC domain profile profile. 80 220 IPR005175 -
Cmu05g0237 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0237 Cmu-Chr5:2007412 Cmu05g0282 Cmu-Chr5:2403443 7.20E-58 dispersed
Cmu05g0237 Cmu-Chr5:2007412 Cmu05g0243 Cmu-Chr5:2072941 2.40E-16 proximal
Cmu01g0336 Cmu-Chr1:3493306 Cmu05g0237 Cmu-Chr5:2007412 2.30E-68 wgd
Cmu05g0237 Cmu-Chr5:2007412 Cmu06g0032 Cmu-Chr6:337616 5.50E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0237 - - - 0.0