Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g0241 | ATGAGCTCGAGGCGCAGCCGCGGAAGTTGCCCAGAAGGCAAAGGTGGTGGACCGTGTGGGGCGTGCAAGTTTCTGCGGAGGAAGTGTATGCCAGAGTGTATATTTGCACCCTACTTCGACTCCGAACAAGGTACAACTCATTTTGCAGCTGTGCACAAGGTGTTCGGAGCCAGCAATGTGTCGAAGATGCTTCTACATATTCCTGAACACAAACGGCTCGACGCAGCTATAACTATATGTTACGAGGCACAAGCTCGAGTCAGAGAGCCAGTTTTTGGCTGTGTTGCTCATATCTTTGCCCTCCAACAACAGGCTGCAAGGTTGCAAGTAGAGATCTCGTATTTGCAAGCGCACCTAGCAACATCTGAGCTTCCAAGACCCGCACCCAATCTACAGGCACAGCCACCAGCTCTAGTCAAGAAGCCAACTCTATCCTCAATTGTAAACCTTCCATCAGATTGCCCTTCTTTTCCTGCTGAATCAGATCTTTCTCGACTTCTCGATCCCATCGAGCAAGCTTCACGGCCGAAGTTGCAATCTCCCTTGGAATTGTCCCAAATTGGAAGCAACAGTTTCCCATCCATGAGCAGCATTGATCAACAAATCGTCCAAAAACAACTGGCCTCAATGCGACACATTGGTGCCTCGCTATTTCCGTGCGTCCCTAAAGGAGCCTAA | 678 | 49.85 | MSSRRSRGSCPEGKGGGPCGACKFLRRKCMPECIFAPYFDSEQGTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQAHLATSELPRPAPNLQAQPPALVKKPTLSSIVNLPSDCPSFPAESDLSRLLDPIEQASRPKLQSPLELSQIGSNSFPSMSSIDQQIVQKQLASMRHIGASLFPCVPKGA | 225 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2045489 | 2046481 | - | CmPI595203_05g002410.1 | Cmu05g0241 | 415155 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g0241 | 225 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 14 | 146 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Cmu05g0241 | 225 | Pfam | Lateral organ boundaries (LOB) domain | 18 | 116 | IPR004883 | - | |
Cmu05g0241 | 225 | ProSiteProfiles | LOB domain profile. | 17 | 119 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g0241 | Cmu-Chr5:2045489 | Cmu07g0147 | Cmu-Chr7:1393721 | 1.70E-39 | dispersed | |
Cmu05g0241 | Cmu-Chr5:2045489 | Cmu06g0034 | Cmu-Chr6:357722 | 3.70E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
6094 | PF03195 | LOB | 1.40E-36 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g0241 | K21994 | - | csv:101216934 | 390.193 |