Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0243 ATGGAAGAGAGAGAAGCCATAAATGCAGGAGTAACAGTGATAGGAGCCGAAGCTCCGTCGGCTTATCACGTGGCTCCGAGAACCGAGAACCCGCCGGCCGGCGGCGGTTCGCCAACCGTCGCTGCCTCGCCGGTAAGCGTGGGGCTGCCCGGAAGTGGAACCACAGGGAAAAAGAAGCGGGGTAGACCTAGAAAGTACGGCCCGGATGGAACGGTAACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCAGCCGGTGGCTTCTCCATTACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAATTCAAACATCACAAGAAAATGGGAATGGAATATATAGGAGAGTGGAATGCGTGTTCTGTCGGTACAAATTTCATGCCTCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGCCCTCGAGCAATCTGTATTCTTTCTGCTAATGGAGTAATTTCGAATGTCACTCTTCGGCAGCCGGATTCTTCGGGTGGTACTTTAACATATGAGGGCCGTTTTGAAATACTTTCTTTATCTGGATCATTCATGCCTACTGAAAATCAAGGAACAAGAAGCAGGTCGGGTGGGATGAGCGTCTCCTTGGCTAGCCCTGATGGTCGTGTTGTTGGGGGAGGGGTAGCTGGTTTACTCATAGCTGCAAGCCCTGTACAGGTTGTGGTTGGGAGTTTTCTACCAACTAGCCAACAGGAACAGAAGGTAAAGAAACAGAAGCCCGAGTCGGTACCAGCTGCAGCCCCTGTTGCAGTCCCGAGCACGGCACTAGCCACGACTGTGCCGGCTTCGAATGCAGATACAGATGACAGTTTAAATGGGAATGGTCTGCAAAATGCCGGGTCGTTAAAACCGGCCAGTTTTGCTCCTTCACCTTTCCAGAGAGACAATTGGGGTACCAATGCTGCTGTGCATTCCTTGCAGGAGCCGAGAAATTCCGCTACCGACATCAATATTTCGCTGCCAGGCTAA 1026 52.34 MEEREAINAGVTVIGAEAPSAYHVAPRTENPPAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEFKHHKKMGMEYIGEWNACSVGTNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLIAASPVQVVVGSFLPTSQQEQKVKKQKPESVPAAAPVAVPSTALATTVPASNADTDDSLNGNGLQNAGSLKPASFAPSPFQRDNWGTNAAVHSLQEPRNSATDINISLPG 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2072941 2077091 + CmPI595203_05g002430.1 Cmu05g0243 415157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0243 341 Gene3D - 131 260 - -
Cmu05g0243 341 FunFam AT-hook motif nuclear-localized protein 1-like 131 261 - -
Cmu05g0243 341 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 244 IPR005175 -
Cmu05g0243 341 CDD DUF296 131 244 IPR005175 -
Cmu05g0243 341 MobiDBLite consensus disorder prediction 248 267 - -
Cmu05g0243 341 SUPERFAMILY AF0104/ALDC/Ptd012-like 129 250 - -
Cmu05g0243 341 MobiDBLite consensus disorder prediction 18 71 - -
Cmu05g0243 341 MobiDBLite consensus disorder prediction 280 303 - -
Cmu05g0243 341 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
Cmu05g0243 341 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 13 287 IPR039605 GO:0003680(InterPro)
Cmu05g0243 341 MobiDBLite consensus disorder prediction 280 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0339 Cmu-Chr1:3560221 Cmu05g0243 Cmu-Chr5:2072941 3.90E-90 dispersed
Cmu04g1010 Cmu-Chr4:24658904 Cmu05g0243 Cmu-Chr5:2072941 4.80E-16 dispersed
Cmu05g0243 Cmu-Chr5:2072941 Cmu11g0043 Cmu-Chr11:906003 3.20E-79 dispersed
Cmu05g0237 Cmu-Chr5:2007412 Cmu05g0243 Cmu-Chr5:2072941 2.40E-16 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0243 - - - 0.0