Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g0245 | ATGGCTCGCAACAGGGTAAACTATTTTCTCTCTTCTGCTATTACTTCGATGTTCGAATTACTTCTTCTTCTTCTTCTTGCCCGAACAAACGGAACTGGCTCTTATAAGAGCTCGGTCTCAGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCTGAGGTCGAAAAAGTGTGTTCAATGCTAGTAGAGAAGAAGCTAATCTACAACAAATATGATGAAGTAGGCATTGTTCTATTTGGAACTGAAGACACTAAAAATGAGCTGACGGAGGAAGTTGGCGGATATCAGCATGTGGTGGTTTTACAGAACATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAATGGATCCCTCGAGGGACTGTTTCCGGTGATTTTCTTGACGCCATAATTGTAGGAATGGATATGCTAATAAAGAAATTTGGGGAGACAGAAAAGGGGAAAAAACGTTTATGTCTCATTACAGATGCTTTATTCTCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATGAGAATGGATAGTGTTGTCGTGAGAGGGAGGTTCAGTCAGAATGCAGATGAGAAAACGATGGATGAAAATGACATTCTTTTAAACATATTTTCAGAGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGAAGTATAGCGCCCGTGACAATTTTTAGAGGTGATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGAGAAGTTTCCTACTTTGAAAAGATATTCTGATAAAGCACCTCCAACTGATAAATTTGCCACACATGAAATCAAGGTAGATTATGAGTACAAAAGCGTCGAAGAACCTAGTAAGGTAGTGCCGCCAGAACATAGGATTAAAGGTTATCGGTATGGACCTCAAGTGGTTCCTATATCGACTGCTGAATGGGATGCAGTGAAGTTCAAACCAGAAAAGAGCGTGAAGCTACTCGGATTTACAAATGCATCAAATATAATGAGGCACTACTACATGAAAGATGTCAATGTCTTCATTGCCGAACCGAGCAATAAAAGAGCCATTGTTGCGGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCAATAGTGCGATGCGTTTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGTGTCTTAACACCCAATATATCCAAGAAGGACGGTATTGCCGATTCGCTATACTTCAATGTACTTCCCTTTGCGGAGGACGTTCGGGAATTCCAATTTCCATCTTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAGCAACAGGCAGCAGATGACTTGGTTAAGACGCTTGATCTTGCACCAGCTGGACGAGAGGAAATTCTACAACCGGATTTCACACCAAATCCTGTTTTGGAGCGCTTCTATCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAAAAGATTACTGAGCCAGATCCGGACTTGTTTTCTCAAAACAAATATGTTATCGATACATTCCATAGAAAATTTGAACTCAAGGAGAACCCAAAGCTAAAGAAACCGAGAAGGCATTATTTACGTGAAAAAGCATCCGGTTCAAGCGATAAAGAGGATAATGATGAGATTTCTGCTGAAATTGTTGAATCTGTTTCCAACATGCCTATAGTCAAGGTCGAAAAGATTGGAGATTCAACTCCACTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAGTGGATCAGTAAAGCAATCTGTGGCATGAGAAACAAAATATTCGATCTTGTCGAGAACTCCTCTGATGGTGATAACTGTCTGAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTCCTCCGTCATCTCCGTAAATTTTGTCCGGAAAATAACCTCCATAGTTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCCGCTGACAGCGTCTCATTCTGTTTCTTCTTCTCGTTGACGATCATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGTCAATATGCCTTGGGAGATGAAGTATATATGGCTGATGTGTTTCTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAAAAGTTACCAGAATTCCAAGCATCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG | 2838 | 41.58 | MARNRVNYFLSSAITSMFELLLLLLLARTNGTGSYKSSVSEILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKWIPRGTVSGDFLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFSIKEPYEGTKEDQVTTIAQQMTKHGMRMDSVVVRGRFSQNADEKTMDENDILLNIFSEKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEIKVDYEYKSVEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISKKDGIADSLYFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQQAADDLVKTLDLAPAGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSQNKYVIDTFHRKFELKENPKLKKPRRHYLREKASGSSDKEDNDEISAEIVESVSNMPIVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAICGMRNKIFDLVENSSDGDNCLKAIEYLRALRKGCIIEQEPKQFNDFLRHLRKFCPENNLHSFCEFLASQQISLISKEEAADSVSFCFFFSLTIMDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEVYMADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPERQPDALH | 945 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2084158 | 2094112 | + | CmPI595203_05g002450.1 | Cmu05g0245 | 415159 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g0245 | 945 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 734 | 815 | IPR004045 | - | |
Cmu05g0245 | 945 | Gene3D | - | 817 | 945 | - | - | |
Cmu05g0245 | 945 | FunFam | ATP-dependent DNA helicase 2 subunit KU80 | 37 | 233 | - | - | |
Cmu05g0245 | 945 | SUPERFAMILY | Thioredoxin-like | 734 | 818 | IPR036249 | - | |
Cmu05g0245 | 945 | SUPERFAMILY | C-terminal domain of Ku80 | 571 | 705 | IPR036494 | - | |
Cmu05g0245 | 945 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 820 | 945 | IPR010987 | - | |
Cmu05g0245 | 945 | SUPERFAMILY | GST C-terminal domain-like | 816 | 943 | IPR036282 | - | |
Cmu05g0245 | 945 | PANTHER | KU AUTOANTIGEN DNA HELICASE | 36 | 674 | - | GO:0000723(PANTHER)|GO:0003690(PANTHER)|GO:0006303(PANTHER)|GO:0042162(PANTHER)|GO:0043564(PANTHER) | |
Cmu05g0245 | 945 | Pfam | Ku70/Ku80 N-terminal alpha/beta domain | 43 | 193 | IPR005161 | - | |
Cmu05g0245 | 945 | Gene3D | von Willebrand factor, type A domain | 36 | 237 | IPR036465 | - | |
Cmu05g0245 | 945 | SFLD | Main (cytGST) | 736 | 926 | - | - | |
Cmu05g0245 | 945 | SMART | ku_4 | 313 | 454 | IPR006164 | GO:0003677(InterPro)|GO:0006303(InterPro) | |
Cmu05g0245 | 945 | FunFam | Glutathione S-transferase Z1 | 734 | 818 | - | - | |
Cmu05g0245 | 945 | CDD | KU80 | 251 | 552 | IPR024193 | GO:0000723(InterPro)|GO:0003677(InterPro)|GO:0003684(InterPro)|GO:0005634(InterPro)|GO:0006303(InterPro)|GO:0006310(InterPro)|GO:0042162(InterPro)|GO:0043564(InterPro) | |
Cmu05g0245 | 945 | SFLD | Glutathione Transferase (cytosolic) | 736 | 926 | IPR040079 | - | |
Cmu05g0245 | 945 | MobiDBLite | consensus disorder prediction | 557 | 576 | - | - | |
Cmu05g0245 | 945 | FunFam | X-ray repair cross-complementing protein 5 | 458 | 554 | - | - | |
Cmu05g0245 | 945 | SUPERFAMILY | vWA-like | 42 | 267 | IPR036465 | - | |
Cmu05g0245 | 945 | Gene3D | - | 569 | 708 | IPR036494 | - | |
Cmu05g0245 | 945 | FunFam | Maleylacetoacetate isomerase | 819 | 945 | - | - | |
Cmu05g0245 | 945 | Pfam | Ku C terminal domain like | 601 | 705 | IPR014893 | - | |
Cmu05g0245 | 945 | SUPERFAMILY | SPOC domain-like | 250 | 553 | IPR016194 | - | |
Cmu05g0245 | 945 | Gene3D | - | 251 | 454 | IPR016194 | - | |
Cmu05g0245 | 945 | NCBIfam | maleylacetoacetate isomerase | 738 | 943 | IPR005955 | GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro) | |
Cmu05g0245 | 945 | CDD | GST_C_Zeta | 824 | 940 | IPR034330 | - | |
Cmu05g0245 | 945 | FunFam | ATP-dependent DNA helicase 2 subunit KU80 | 251 | 453 | - | - | |
Cmu05g0245 | 945 | Pfam | Glutathione S-transferase, C-terminal domain | 860 | 932 | IPR004046 | - | |
Cmu05g0245 | 945 | CDD | GST_N_Zeta | 737 | 808 | IPR034333 | - | |
Cmu05g0245 | 945 | Pfam | Ku70/Ku80 beta-barrel domain | 262 | 466 | IPR006164 | GO:0003677(InterPro)|GO:0006303(InterPro) | |
Cmu05g0245 | 945 | Gene3D | - | 458 | 554 | - | - | |
Cmu05g0245 | 945 | Pfam | Glutathione S-transferase, N-terminal domain | 738 | 814 | IPR004045 | - | |
Cmu05g0245 | 945 | Gene3D | Glutaredoxin | 738 | 814 | - | - | |
Cmu05g0245 | 945 | Pfam | Ku70/Ku80 C-terminal arm | 487 | 572 | IPR005160 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0006303(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g0037 | Cmu-Chr2:434764 | Cmu05g0245 | Cmu-Chr5:2084158 | 8.70E-73 | dispersed | |
Cmu05g0245 | Cmu-Chr5:2084158 | Cmu05g0400 | Cmu-Chr5:3397766 | 6.30E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g0245 | K10885 | - | csv:101217407 | 1210.28 |