Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0245 ATGGCTCGCAACAGGGTAAACTATTTTCTCTCTTCTGCTATTACTTCGATGTTCGAATTACTTCTTCTTCTTCTTCTTGCCCGAACAAACGGAACTGGCTCTTATAAGAGCTCGGTCTCAGAAATCTTGGTGCTGGTGCTGGATGTTGGTCCATCAATGCACTCTATTCTCCCTGAGGTCGAAAAAGTGTGTTCAATGCTAGTAGAGAAGAAGCTAATCTACAACAAATATGATGAAGTAGGCATTGTTCTATTTGGAACTGAAGACACTAAAAATGAGCTGACGGAGGAAGTTGGCGGATATCAGCATGTGGTGGTTTTACAGAACATGAAAGTGGTTGATGGAGATCTTGTTGATGTTCTAAAATGGATCCCTCGAGGGACTGTTTCCGGTGATTTTCTTGACGCCATAATTGTAGGAATGGATATGCTAATAAAGAAATTTGGGGAGACAGAAAAGGGGAAAAAACGTTTATGTCTCATTACAGATGCTTTATTCTCTATAAAAGAACCTTATGAAGGAACTAAAGAGGATCAAGTTACGACCATTGCACAACAGATGACAAAACATGGCATGAGAATGGATAGTGTTGTCGTGAGAGGGAGGTTCAGTCAGAATGCAGATGAGAAAACGATGGATGAAAATGACATTCTTTTAAACATATTTTCAGAGAAAACAAATGCAAAAATGGTGTATGTGGAGAGTCCAACTTCATTATTAGGTGCAATCCGGACTCGAAGTATAGCGCCCGTGACAATTTTTAGAGGTGATCTTGAGATAAGCTCCGTTATCAAGATTAAGGTATGGGTTTACAAGAAAACATCAGAAGAGAAGTTTCCTACTTTGAAAAGATATTCTGATAAAGCACCTCCAACTGATAAATTTGCCACACATGAAATCAAGGTAGATTATGAGTACAAAAGCGTCGAAGAACCTAGTAAGGTAGTGCCGCCAGAACATAGGATTAAAGGTTATCGGTATGGACCTCAAGTGGTTCCTATATCGACTGCTGAATGGGATGCAGTGAAGTTCAAACCAGAAAAGAGCGTGAAGCTACTCGGATTTACAAATGCATCAAATATAATGAGGCACTACTACATGAAAGATGTCAATGTCTTCATTGCCGAACCGAGCAATAAAAGAGCCATTGTTGCGGTTTCTGCTCTAGCAAGAGCAATGAAGGAAATGGACAAAGTGGCAATAGTGCGATGCGTTTGGAGACAAGGACAAGGGAGTGTTGTTGTGGGTGTCTTAACACCCAATATATCCAAGAAGGACGGTATTGCCGATTCGCTATACTTCAATGTACTTCCCTTTGCGGAGGACGTTCGGGAATTCCAATTTCCATCTTTCAGCAATTTGCCAGCATTGATGCAGCCAAGTGAAGAACAGCAACAGGCAGCAGATGACTTGGTTAAGACGCTTGATCTTGCACCAGCTGGACGAGAGGAAATTCTACAACCGGATTTCACACCAAATCCTGTTTTGGAGCGCTTCTATCGTCATCTCGAGTTGAAATCAAAGGATCCAGATGCTGCTGTACCTCCACTTGATGGAACTCTCCAAAAGATTACTGAGCCAGATCCGGACTTGTTTTCTCAAAACAAATATGTTATCGATACATTCCATAGAAAATTTGAACTCAAGGAGAACCCAAAGCTAAAGAAACCGAGAAGGCATTATTTACGTGAAAAAGCATCCGGTTCAAGCGATAAAGAGGATAATGATGAGATTTCTGCTGAAATTGTTGAATCTGTTTCCAACATGCCTATAGTCAAGGTCGAAAAGATTGGAGATTCAACTCCACTTGAAGATTTTGAAGCTATGATGTCTAGAAGAGATAGTCCAGAGTGGATCAGTAAAGCAATCTGTGGCATGAGAAACAAAATATTCGATCTTGTCGAGAACTCCTCTGATGGTGATAACTGTCTGAAAGCTATCGAGTATTTGCGTGCGCTTCGCAAGGGTTGCATTATTGAACAAGAACCGAAGCAATTCAACGATTTCCTCCGTCATCTCCGTAAATTTTGTCCGGAAAATAACCTCCATAGTTTCTGTGAATTCCTTGCATCTCAACAAATTAGTTTGATCTCCAAGGAAGAAGCCGCTGACAGCGTCTCATTCTGTTTCTTCTTCTCGTTGACGATCATGGACTTCCAAGCTCACTCTCTGAAAAGCTCCGACGATTCGTCAACGTCTTCGAAGCTGGTTCTTTATTCTTTCTGGCGGAGCTCCTGCTCGTGGCGTGTTCGCTTTGCGTTGAACCTCAAAGGGCTTTCTTACGAGTACAGAGCAGTAAACCTTGGGAGAAGAGAACAATTAAGTCCAGATTTTGAGCGCCTAAATCCTCTTAAATATGTTCCTGTATTAGTAGATGGTCCTGTGGTAGTTTCAGACTCTTACGCGATTTTGCTGTATCTGGAAGAGAAATATCCACAGAAGGCGCTGCTGCCTGCTGATCTTCGTTTAAAATCTCTTAATCTGCAAGTGGGAAGTATCATCAGCTCAAGCATACAGCCTGTCATAATGATGGGATTGCTGAAAACTATCGAGGAAAAATTTGGTCCAGAAGAGCAACTGCCATGGGCTCAGTCCAATTTAGAAAAAGGTTTCAATGCTCTTGAGAAACTGCTGAAGGATTTTTCTGGTCAATATGCCTTGGGAGATGAAGTATATATGGCTGATGTGTTTCTGGCCCCCCAAATTTCAAATGCTATTGAGAACTTCGACACTGACATGTCTAAGTTTCCTACCTTAGCAAGGATTTATGAATCTTACAAAAAGTTACCAGAATTCCAAGCATCGTCACCAGAAAGGCAGCCTGACGCCCTTCATTAG 2838 41.58 MARNRVNYFLSSAITSMFELLLLLLLARTNGTGSYKSSVSEILVLVLDVGPSMHSILPEVEKVCSMLVEKKLIYNKYDEVGIVLFGTEDTKNELTEEVGGYQHVVVLQNMKVVDGDLVDVLKWIPRGTVSGDFLDAIIVGMDMLIKKFGETEKGKKRLCLITDALFSIKEPYEGTKEDQVTTIAQQMTKHGMRMDSVVVRGRFSQNADEKTMDENDILLNIFSEKTNAKMVYVESPTSLLGAIRTRSIAPVTIFRGDLEISSVIKIKVWVYKKTSEEKFPTLKRYSDKAPPTDKFATHEIKVDYEYKSVEEPSKVVPPEHRIKGYRYGPQVVPISTAEWDAVKFKPEKSVKLLGFTNASNIMRHYYMKDVNVFIAEPSNKRAIVAVSALARAMKEMDKVAIVRCVWRQGQGSVVVGVLTPNISKKDGIADSLYFNVLPFAEDVREFQFPSFSNLPALMQPSEEQQQAADDLVKTLDLAPAGREEILQPDFTPNPVLERFYRHLELKSKDPDAAVPPLDGTLQKITEPDPDLFSQNKYVIDTFHRKFELKENPKLKKPRRHYLREKASGSSDKEDNDEISAEIVESVSNMPIVKVEKIGDSTPLEDFEAMMSRRDSPEWISKAICGMRNKIFDLVENSSDGDNCLKAIEYLRALRKGCIIEQEPKQFNDFLRHLRKFCPENNLHSFCEFLASQQISLISKEEAADSVSFCFFFSLTIMDFQAHSLKSSDDSSTSSKLVLYSFWRSSCSWRVRFALNLKGLSYEYRAVNLGRREQLSPDFERLNPLKYVPVLVDGPVVVSDSYAILLYLEEKYPQKALLPADLRLKSLNLQVGSIISSSIQPVIMMGLLKTIEEKFGPEEQLPWAQSNLEKGFNALEKLLKDFSGQYALGDEVYMADVFLAPQISNAIENFDTDMSKFPTLARIYESYKKLPEFQASSPERQPDALH 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2084158 2094112 + CmPI595203_05g002450.1 Cmu05g0245 415159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0245 945 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 734 815 IPR004045 -
Cmu05g0245 945 Gene3D - 817 945 - -
Cmu05g0245 945 FunFam ATP-dependent DNA helicase 2 subunit KU80 37 233 - -
Cmu05g0245 945 SUPERFAMILY Thioredoxin-like 734 818 IPR036249 -
Cmu05g0245 945 SUPERFAMILY C-terminal domain of Ku80 571 705 IPR036494 -
Cmu05g0245 945 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 820 945 IPR010987 -
Cmu05g0245 945 SUPERFAMILY GST C-terminal domain-like 816 943 IPR036282 -
Cmu05g0245 945 PANTHER KU AUTOANTIGEN DNA HELICASE 36 674 - GO:0000723(PANTHER)|GO:0003690(PANTHER)|GO:0006303(PANTHER)|GO:0042162(PANTHER)|GO:0043564(PANTHER)
Cmu05g0245 945 Pfam Ku70/Ku80 N-terminal alpha/beta domain 43 193 IPR005161 -
Cmu05g0245 945 Gene3D von Willebrand factor, type A domain 36 237 IPR036465 -
Cmu05g0245 945 SFLD Main (cytGST) 736 926 - -
Cmu05g0245 945 SMART ku_4 313 454 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Cmu05g0245 945 FunFam Glutathione S-transferase Z1 734 818 - -
Cmu05g0245 945 CDD KU80 251 552 IPR024193 GO:0000723(InterPro)|GO:0003677(InterPro)|GO:0003684(InterPro)|GO:0005634(InterPro)|GO:0006303(InterPro)|GO:0006310(InterPro)|GO:0042162(InterPro)|GO:0043564(InterPro)
Cmu05g0245 945 SFLD Glutathione Transferase (cytosolic) 736 926 IPR040079 -
Cmu05g0245 945 MobiDBLite consensus disorder prediction 557 576 - -
Cmu05g0245 945 FunFam X-ray repair cross-complementing protein 5 458 554 - -
Cmu05g0245 945 SUPERFAMILY vWA-like 42 267 IPR036465 -
Cmu05g0245 945 Gene3D - 569 708 IPR036494 -
Cmu05g0245 945 FunFam Maleylacetoacetate isomerase 819 945 - -
Cmu05g0245 945 Pfam Ku C terminal domain like 601 705 IPR014893 -
Cmu05g0245 945 SUPERFAMILY SPOC domain-like 250 553 IPR016194 -
Cmu05g0245 945 Gene3D - 251 454 IPR016194 -
Cmu05g0245 945 NCBIfam maleylacetoacetate isomerase 738 943 IPR005955 GO:0003824(InterPro)|GO:0005737(InterPro)|GO:0009072(InterPro)
Cmu05g0245 945 CDD GST_C_Zeta 824 940 IPR034330 -
Cmu05g0245 945 FunFam ATP-dependent DNA helicase 2 subunit KU80 251 453 - -
Cmu05g0245 945 Pfam Glutathione S-transferase, C-terminal domain 860 932 IPR004046 -
Cmu05g0245 945 CDD GST_N_Zeta 737 808 IPR034333 -
Cmu05g0245 945 Pfam Ku70/Ku80 beta-barrel domain 262 466 IPR006164 GO:0003677(InterPro)|GO:0006303(InterPro)
Cmu05g0245 945 Gene3D - 458 554 - -
Cmu05g0245 945 Pfam Glutathione S-transferase, N-terminal domain 738 814 IPR004045 -
Cmu05g0245 945 Gene3D Glutaredoxin 738 814 - -
Cmu05g0245 945 Pfam Ku70/Ku80 C-terminal arm 487 572 IPR005160 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0006303(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0037 Cmu-Chr2:434764 Cmu05g0245 Cmu-Chr5:2084158 8.70E-73 dispersed
Cmu05g0245 Cmu-Chr5:2084158 Cmu05g0400 Cmu-Chr5:3397766 6.30E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0245 K10885 - csv:101217407 1210.28