Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0260 ATGCCTTTCCCCGTCGCTACCTTTCTACTCCTCTTCTTACCCCTGGTAGTGGTGGCTTCCTCTATTTCTTCGTTGCCCGAGCTGGACCCGGTTCGGTTCGCCCAGACCGGGGTTGCGGAAGCCAGAACCGAAATAGGTAAGTTAAAACGACGTCGATTTGGGCTTGGCGATTGCTCTACGCTCTACGAGGAGGCGGACTGGCGGCTCGCCGGGATGTTGGTTGGAGAGAATTATACGGCGGAAGATGCTCGGGCGTGGCTTAGCGCCGCCGTGGCTAACCATCGGAGTTGTTTGGATGGCTTGGAAGAGGTTGGTGCCGCGACGGCGGTGGAATATGGGAATAACTTGACCGTGATGCTCACCGGAGCTCTGCATTTATACGACAAGATTGCTGCTGTGGAGAAGCGGAAGGGAAGGGAAGTAGTGAAGAAACAGAAATGGAGAGAAAACAGAGGAATGGACTTGGCGAAGTGGAATCCGGTGACCTCGAAGGCAGACTACGTGGTGGCGAAAGACGGGTCCGGCACCCACACAACCATAAACGGGGCGGTGGCGACTCTGGCGAGGACTGGACGGAGACGGCGGGGGGAGAGAATTGTGATATACGTGAAAGCCGGTGTTTACAAGGAAAATGTGGAAATTGGAATACAGTTGAAGAACGTCATGGTTGTTGGTGACGGCGCAGACAAAACCATCGTCACCGGTAGCCGCAACGTGCCCGACGGTGCCACCACTTATAACTCAGCTACATTTGGTGTTTCCGGCGACGGATTTTGGGCGAGGGACATAACTTTCGAGAACACAGCCGGACCGGAAAAGCAACAGGCGGTGGCGCTACGGCTGAATTCAGACCTTGCCGTCGTATATCGGTGCGCAATAAAAGGTTATCAGGACACGCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCAAATCTACGGCACCATCGATTTCATTTTCGGGAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGACGACCGATTCGCCACCAGGCTAACATGATCACCGCCCAAGGTCGCGACGATCCGGCCGAGCCCACCGGAATTTCCATCCTCAACTCCAGAGTCCAGCCGGCGCCGGATTTCGCACCCGTAAAGGCTCAATATAGAACCTACCTCGGCCGCCCGTGGAAGCGGTTTTCGAGGACGGTGGTTATGGCGACAGATTTGGACGGATTGATCGATCCGAAAGGGTGGGGAGAATGGAGGGGGGATTTTGCGATTTCGACTTTGTTTTATGCAGAGTTTAAGAACAGGGGCGGCGGTTCTTCGACGAGATTTAGGGTTAATTGGCCGGGGTTTCACGTCCTCCATAGCGCGGAGGAGGCGCGACCTTTCACGGTGGCTGAGTTTCTTCACGGCGGCGCTTGGATTCCGGCCACCGGCGTACCCTTCGAGGCGGGCGTTTGA 1446 56.09 MPFPVATFLLLFLPLVVVASSISSLPELDPVRFAQTGVAEARTEIGKLKRRRFGLGDCSTLYEEADWRLAGMLVGENYTAEDARAWLSAAVANHRSCLDGLEEVGAATAVEYGNNLTVMLTGALHLYDKIAAVEKRKGREVVKKQKWRENRGMDLAKWNPVTSKADYVVAKDGSGTHTTINGAVATLARTGRRRRGERIVIYVKAGVYKENVEIGIQLKNVMVVGDGADKTIVTGSRNVPDGATTYNSATFGVSGDGFWARDITFENTAGPEKQQAVALRLNSDLAVVYRCAIKGYQDTLFLHSLRQFYRDCQIYGTIDFIFGNSAAVLQNCEIFVRRPIRHQANMITAQGRDDPAEPTGISILNSRVQPAPDFAPVKAQYRTYLGRPWKRFSRTVVMATDLDGLIDPKGWGEWRGDFAISTLFYAEFKNRGGGSSTRFRVNWPGFHVLHSAEEARPFTVAEFLHGGAWIPATGVPFEAGV 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2221151 2224447 - CmPI595203_05g002600.1 Cmu05g0260 415174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0260 481 Pfam Pectinesterase 167 466 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu05g0260 481 Pfam Plant invertase/pectin methylesterase inhibitor 35 107 IPR006501 GO:0004857(InterPro)
Cmu05g0260 481 Gene3D - 160 481 IPR012334 -
Cmu05g0260 481 SUPERFAMILY Pectin lyase-like 162 479 IPR011050 -
Cmu05g0260 481 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 114 IPR035513 -
Cmu05g0260 481 PANTHER PECTINESTERASE 51 472 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cmu05g0260 481 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 130 IPR035513 -
Cmu05g0260 481 FunFam Pectinesterase 160 481 - -
Cmu05g0260 481 ProSitePatterns Pectinesterase signature 2. 314 323 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0260 Cmu-Chr5:2221151 Cmu05g0821 Cmu-Chr5:7424347 9.40E-109 dispersed
Cmu05g0260 Cmu-Chr5:2221151 Cmu05g0261 Cmu-Chr5:2236342 1.60E-100 tandem
Cmu01g0461 Cmu-Chr1:4746036 Cmu05g0260 Cmu-Chr5:2221151 1.20E-109 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0260 K01051 - csv:101217635 795.423