Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0261 ATGGGAAGGCATTCGACCACCTTTGTTGTTGTTCTTATTGTTCTTCTTATTCCGACCGAGATTTTTTGTTATTCCGAAAAAGAAATAAAACGTTGGTGTAGCCAAACGCCATATCCAGCTCCATGTGAGGAATTTCTCAAAACCAAAGCCTTAACAAACAAATCTCCAATAGTCAATAAATCCCATTTCTTTGAAATCTTAGTCCAAACGGCACTCGAACGTGCCGTTTCGGCCCATAAAAACGCTCTTTCTCTCGGCCCAAAATGCCGAAATGCCAAAGAAAAAACCGCATGGACTGATTGTGTTGACCTCTACGACCAAATCATAACCCGCCTCAACCGAACCGCCGACCGCTGCTCCCCGGTTGACGCACAAACCTGGCTCAGCGCCGCTCTCACCGCCCTCGAAACCTGCCGGACCGGGTTCGAGGAGCTCGGGGTTTCGGCTTTCGGCTACTCATTGACGGCCAATAATGTTTCAAAGCTGATTAGCGATGGGTTGTCGGTGAATAAACCGCCGTCGCCGGAGGGGTATGAACCGCAGACCATGGCGGAGGGGTTCCCGACGTGGGTTAGGCCCGGTGACCGGAAATTGCTGCAGGCGGGGTCTCCGAAGGCGAACGTCGTGGTGGCGAAGGATGGGTCAGGGAATTTTCAGACGGTGAAGGAGGCGGTGGCCGCCGCGAAGGGCGGCGGGAGATTTGTGATATATGTGAAGGCGGGGGTTTATAGCGAGAATGTGGAGATTAAGGCTAAGAATGTCATGTTAATCGGAGATGGAATCGGAAAAACTGTCATCACCGGAAGTAGAAGTGTCGGCGGAGGTTCCACCACGTTCAGATCCGCCACCGTTGCCGTTGATGGAGACGGATTCATCGCGCGAGACATAACTTTCAGAAACACAGCCGGGGCAAAGAACCACCAGGCGGTGGCGCTCCGATCGGGTTCCGATCTCTCCGTCTTCTACCGTTGCGGCTTCGAAGGCTTTCAAGACACTCTCTACGTTTACGCCGAACGCCAATTCTACAAACAATGCGACATTTACGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGTCGTAATCCAAGATTCCAACATCATCGCTCGTGATCCTCCGAACAAAACCATCACACTCACCGCCCAAGGCCGCACCGATCCGAATCAGAACACCGGAATCTCCATCCACAATTGCAGAGTCACCTCCGCCGGCGGCCTCAGCGGCGTCAAGGCCTATTTAGGCCGCCCGTGGAAGCAGTACTCGCGGACGGTTTTTATGAAATCGTCGATCGGAGGATTCATCAGTCCGGCGGGGTGGATGGAGTGGAGCGGTAATTTTGCCCTAAATACGCTGTATTACGGCGAGTATATGAATACCGGTCCGGGAGCGTCGACGGCGAACCGAGTGAAATGGAAGGGTTATCATGTGATAACCAGTGCGGCGGAGGCTTCAAAGTTCACCGTCGGGAATTTCATCGCCGGTGGATCTTGGTTGCCGAGTACCGGCGTGCCTTTCACCTCCGGCCTCTGA 1530 53.59 MGRHSTTFVVVLIVLLIPTEIFCYSEKEIKRWCSQTPYPAPCEEFLKTKALTNKSPIVNKSHFFEILVQTALERAVSAHKNALSLGPKCRNAKEKTAWTDCVDLYDQIITRLNRTADRCSPVDAQTWLSAALTALETCRTGFEELGVSAFGYSLTANNVSKLISDGLSVNKPPSPEGYEPQTMAEGFPTWVRPGDRKLLQAGSPKANVVVAKDGSGNFQTVKEAVAAAKGGGRFVIYVKAGVYSENVEIKAKNVMLIGDGIGKTVITGSRSVGGGSTTFRSATVAVDGDGFIARDITFRNTAGAKNHQAVALRSGSDLSVFYRCGFEGFQDTLYVYAERQFYKQCDIYGTVDFIFGNAAVVIQDSNIIARDPPNKTITLTAQGRTDPNQNTGISIHNCRVTSAGGLSGVKAYLGRPWKQYSRTVFMKSSIGGFISPAGWMEWSGNFALNTLYYGEYMNTGPGASTANRVKWKGYHVITSAAEASKFTVGNFIAGGSWLPSTGVPFTSGL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2236342 2241142 + CmPI595203_05g002610.1 Cmu05g0261 415175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0261 509 ProSitePatterns Pectinesterase signature 2. 347 356 IPR033131 -
Cmu05g0261 509 Gene3D - 202 509 IPR012334 -
Cmu05g0261 509 FunFam Pectinesterase 201 509 - -
Cmu05g0261 509 Pfam Pectinesterase 207 494 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cmu05g0261 509 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Cmu05g0261 509 Pfam Plant invertase/pectin methylesterase inhibitor 28 168 IPR006501 GO:0004857(InterPro)
Cmu05g0261 509 SMART PMEI_2 24 169 IPR006501 GO:0004857(InterPro)
Cmu05g0261 509 CDD PMEI-like_3 32 174 - -
Cmu05g0261 509 NCBIfam pectinesterase inhibitor domain 4 161 IPR006501 GO:0004857(InterPro)
Cmu05g0261 509 SUPERFAMILY Pectin lyase-like 204 508 IPR011050 -
Cmu05g0261 509 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 171 IPR035513 -
Cmu05g0261 509 PANTHER PECTINESTERASE 9 500 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0261 Cmu-Chr5:2236342 Cmu05g0821 Cmu-Chr5:7424347 1.30E-153 dispersed
Cmu05g0260 Cmu-Chr5:2221151 Cmu05g0261 Cmu-Chr5:2236342 1.60E-100 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0261 K01051 - csv:101217552 926.006