Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0272 ATGGAAGAAGAGCTGAAACTATTCAGAACGTGGTCGAGTCCGTTCCCTCTGAGGATAGTATGGGCGTTGAAATTGAAAGGATTAGAATACGATACCGTTTACGAAGATCTGGCCAACAAGAGCCCCTTGCTTTTGGAGTACAATCCGATTCATAAGAAAGTTCCGGTGCTCGTCCATGGCGGAAAGCCGATCGCCGAATCGCTCGTTATTCTTGAATACATCGACGAAACATGGAAGCAAAATCCATTGCTGCCTCAGGATCCTTACCAGAGAGCCGTTGCTCGCTTTTGGGCCAAATTTGGGGATGACAAGGTTTTGGAATCTATAAAGAAAGTGTTTATGAACCAAGGGAAAGTGAGAGAGGAAGGTGTGGAAGAAGCCTTGGAGAATTTGAAGCATTTGGAAGAAGAGTTAAAAGGAAAGAGGTTCTTTGGAGGGGAGGCCATTGGGTTTGTGGATATTACGGTTGGGTGGCTTGCAAACATAGCAAGTGTAGTGGAGGAAGTTGTTGGAGTTGAACTGATAACTGAACAAAGGTTTCCCCTCTTGTCCAAATGGATAAAGGAATTTGCTGCCTCTCCAATCATCAATGAAAACTGGCCGCCTAGAGACAAGCTTGTCACTAAGTACCAAGCAATGCGTCAAACTTTTATGAATAAACAAGCATAA 669 44.25 MEEELKLFRTWSSPFPLRIVWALKLKGLEYDTVYEDLANKSPLLLEYNPIHKKVPVLVHGGKPIAESLVILEYIDETWKQNPLLPQDPYQRAVARFWAKFGDDKVLESIKKVFMNQGKVREEGVEEALENLKHLEEELKGKRFFGGEAIGFVDITVGWLANIASVVEEVVGVELITEQRFPLLSKWIKEFAASPIINENWPPRDKLVTKYQAMRQTFMNKQA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2315138 2317324 - CmPI595203_05g002720.1 Cmu05g0272 415186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0272 222 Gene3D - 84 221 - -
Cmu05g0272 222 SUPERFAMILY Thioredoxin-like 5 104 IPR036249 -
Cmu05g0272 222 FunFam Tau class glutathione S-transferase 1 86 - -
Cmu05g0272 222 Pfam Glutathione S-transferase, C-terminal domain 117 194 IPR004046 -
Cmu05g0272 222 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cmu05g0272 222 SUPERFAMILY GST C-terminal domain-like 76 217 IPR036282 -
Cmu05g0272 222 Gene3D Glutaredoxin 1 83 - -
Cmu05g0272 222 SFLD Main.3: Omega- and Tau-like 2 221 IPR045073 -
Cmu05g0272 222 FunFam Tau class glutathione S-transferase 84 220 - -
Cmu05g0272 222 Coils Coil 121 141 - -
Cmu05g0272 222 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 211 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cmu05g0272 222 CDD GST_C_Tau 88 207 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cmu05g0272 222 CDD GST_N_Tau 5 78 - -
Cmu05g0272 222 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Cmu05g0272 222 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 210 IPR010987 -
Cmu05g0272 222 SFLD Main (cytGST) 2 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0803 Cmu-Chr4:22551814 Cmu05g0272 Cmu-Chr5:2315138 1.30E-29 dispersed
Cmu04g0804 Cmu-Chr4:22556601 Cmu05g0272 Cmu-Chr5:2315138 3.80E-57 dispersed
Cmu04g0805 Cmu-Chr4:22563100 Cmu05g0272 Cmu-Chr5:2315138 1.40E-49 dispersed
Cmu05g0272 Cmu-Chr5:2315138 Cmu06g1506 Cmu-Chr6:26332020 1.10E-56 dispersed
Cmu05g0272 Cmu-Chr5:2315138 Cmu05g2488 Cmu-Chr5:33746061 1.50E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0272 K00799 - csv:101219529 413.305