Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0282 ATGGCGGGCTTAGATTTGGGCTCTGCTTCTCACTTTGTTCATCAACTTCAGCACCGTTCCGTCGATCTTCACCTGCAGCATCCGACGGATGTAGACGACAGTTCCGACCACCATCCGAACTCCGGCGGCGAAATCGTCGCCCGGCGGTCCAGGGGCAGACCGCCCGGTTCTAAAAATAAACCGAAGCCACCGGTTATTATTACCAGAGAAAGCGCTAACACCCTCCGAGCCCACATCTTGGAAGTCAACTCCGGTTGCGATGTCTTTGACTCCGTCGCCACTTATGCTCGGAAGCGCCAGCGTGGCATCTGCATCTTGAGCGGCACCGGCGCCGTCACCAACGTTACCTTACGGCAACCTGCATCAGCCGGTGCCGTTGTCACTCTCCCTGGCAGGTTCGAGATACTGTCTTTGTCGGGATCGTTCTTGCCGCCACCGGCTCCACCGGGAGCTACGAGTTTGACTATCTTCCTTGCGGGTGGGCAAGGACAAATCGTCGGCGGAAATGTTGTTGGACCTTTGATTGCTTCTGGACCGGTGATCGTCATTGCGTCGTCGTTTACCAATGTTGCTTACGAGAGGTTGCCGTTGGACGAGGAGGAACAACCGTCGAACAGTGGTGGTGGGAGCCTTAGCAACCCGTTTCCGGACCCATCGGCCGGGTTGCCGTTCTTTAATCTACCGTCGAGCATGGCGGGGAATCAAAATCAGCTGCCGGTGGACGGATGGGGTGGAGGAAACTCCGGTGGGAGAGCATCTTATTGA 765 56.73 MAGLDLGSASHFVHQLQHRSVDLHLQHPTDVDDSSDHHPNSGGEIVARRSRGRPPGSKNKPKPPVIITRESANTLRAHILEVNSGCDVFDSVATYARKRQRGICILSGTGAVTNVTLRQPASAGAVVTLPGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQIVGGNVVGPLIASGPVIVIASSFTNVAYERLPLDEEEQPSNSGGGSLSNPFPDPSAGLPFFNLPSSMAGNQNQLPVDGWGGGNSGGRASY 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2403443 2404374 + CmPI595203_05g002820.1 Cmu05g0282 415196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0282 254 CDD DUF296 76 185 IPR005175 -
Cmu05g0282 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 201 - -
Cmu05g0282 254 ProSiteProfiles PPC domain profile profile. 72 214 IPR005175 -
Cmu05g0282 254 MobiDBLite consensus disorder prediction 228 242 - -
Cmu05g0282 254 FunFam AT-hook motif nuclear-localized protein 75 202 - -
Cmu05g0282 254 Gene3D - 75 203 - -
Cmu05g0282 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 76 188 IPR005175 -
Cmu05g0282 254 MobiDBLite consensus disorder prediction 198 254 - -
Cmu05g0282 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 34 207 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu05g0282 254 MobiDBLite consensus disorder prediction 27 65 - -
Cmu05g0282 254 MobiDBLite consensus disorder prediction 27 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g0336 Cmu-Chr1:3493306 Cmu05g0282 Cmu-Chr5:2403443 4.60E-69 dispersed
Cmu05g0237 Cmu-Chr5:2007412 Cmu05g0282 Cmu-Chr5:2403443 7.20E-58 dispersed
Cmu05g0282 Cmu-Chr5:2403443 Cmu10g1022 Cmu-Chr10:2183337 3.50E-78 dispersed
Cmu01g0495 Cmu-Chr1:5108335 Cmu05g0282 Cmu-Chr5:2403443 1.50E-19 wgd
Cmu10g1021 Cmu-Chr10:2167894 Cmu05g0282 Cmu-Chr5:2403443 6.80E-13 wgd
Cmu05g0282 Cmu-Chr5:2403443 Cmu06g0068 Cmu-Chr6:641386 4.40E-89 wgd
Cmu05g0282 Cmu-Chr5:2403443 Cmu09g1156 Cmu-Chr9:12476026 1.50E-81 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0282 - - - 0.0