Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0339 ATGCGTAGAGTATCAGTCCATCGCTTCGTCGCCATGGTTTCGCTAGCTTTGTCCTTACGATACCAACAGATGTCGCCGGAGTTTTTTCAACGAGGGGCAGTGGCGGCAAGTAGCAACAGTGGCCGTGCTTCGACGAAGCTCCCCGACTGCTCCTCATCTTCTTCGTCGTGGTCGTTCTCCCTATCGGAGTTCGATCAGCCTTTTACAGAGCAACAACTCCAGGCGATCGAGGCCATTGAAGCTGCATATCAATCCACCAGCGCCAAAAAACGACGAGCAAATTCCACACCCGAAGAAAATGAGGTCTCGTGCGTTTCTCCCGACACCGGCCGGAGATTGCCTCCTTCCATTTCGTCTCACCAGTCTCCATATTCTTCTCCCCTATCGCCCTGTCGAGTAAACTCGAAGATGAGATTTCCTGCACTGAGTTTTGGTGGCCGAATTATTTACAGTAGAACTGTGAGTGAGGTCGATAGAGCGTCCAAGGAGCTCGCAAAGAAAATCAACTCCATGACGAAAGGAATGTATCGAATTACTATTGGGTTCGATATCGAGTGGAAACCCACATTTAGAAGAGGTGTTCCACCCGGAAAGGCTGCAGTTATGCAACTGTGCTTGGACAATTCTCAATGCCATGTGATGCATATCATTCATTCGGGAATACCTCAAAGTTTGCAGGCTCTTCTAGAGGATGACACACTCAGCAAGGCTGGAGTTGGCATTGTCAATGATGCTATAAAAGTTTTTAAAGATTATAACGTGTCTATCAAAGCAGTGGACGAGATCTCGGATCTAGCTAATCAAAAGCTTGCTGGAGTTCCCCGAAAATGGAGTCTTGGGTCTCTAACTGAGACGCTTATATCAAAAGAGCTTCAAAAGCCCAACAAAATCAGACTTGGGAACTGGGAGGTGGCTGTGTTATCAAAGGAGCAGCTGCAGTATGCTGCCACAGACGCATTTGCTTCTTGGTATTTACATGAGATCTTAAAAGGATTTCCACATGCTCAAAAAGTAGCAGATTCAGAACCAATAGTGTGA 1038 47.01 MRRVSVHRFVAMVSLALSLRYQQMSPEFFQRGAVAASSNSGRASTKLPDCSSSSSSWSFSLSEFDQPFTEQQLQAIEAIEAAYQSTSAKKRRANSTPEENEVSCVSPDTGRRLPPSISSHQSPYSSPLSPCRVNSKMRFPALSFGGRIIYSRTVSEVDRASKELAKKINSMTKGMYRITIGFDIEWKPTFRRGVPPGKAAVMQLCLDNSQCHVMHIIHSGIPQSLQALLEDDTLSKAGVGIVNDAIKVFKDYNVSIKAVDEISDLANQKLAGVPRKWSLGSLTETLISKELQKPNKIRLGNWEVAVLSKEQLQYAATDAFASWYLHEILKGFPHAQKVADSEPIV 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2874024 2878627 + CmPI595203_05g003390.1 Cmu05g0339 415253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0339 345 PANTHER 3-5 EXONUCLEASE 104 326 IPR051132 GO:0008408(PANTHER)
Cmu05g0339 345 MobiDBLite consensus disorder prediction 87 129 - -
Cmu05g0339 345 Pfam 3'-5' exonuclease 161 330 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Cmu05g0339 345 CDD WRN_exo 152 330 - -
Cmu05g0339 345 SMART 35exoneu6 148 334 IPR002562 GO:0003676(InterPro)|GO:0006139(InterPro)|GO:0008408(InterPro)
Cmu05g0339 345 MobiDBLite consensus disorder prediction 112 129 - -
Cmu05g0339 345 Gene3D - 132 332 IPR036397 GO:0003676(InterPro)
Cmu05g0339 345 FunFam Werner Syndrome-like exonuclease 131 336 - -
Cmu05g0339 345 SUPERFAMILY Ribonuclease H-like 179 330 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0339 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0339 Cmu-Chr5:2874024 Cmu10g2375 Cmu-Chr10:30178886 3.30E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g922 . . . . . . . . . . . . Car06g01051 . Sed02g1532 Cpe08g00414 . Bhi01g00195 Tan10g0489 Cmetu04g0875 . Hepe05g1779 . Lcy11g1794 . . . . . . . . . Cone7ag0412 . Lsi05g01862 . . Cme06g00364 . . Bda11g00322 . . Bpe13g00871 . . . Cmo06g01236 . . . . . . . . . . . . . . Cla05g00328 Cam05g0358 Cec05g0361 Cco05g0364 Clacu05g0354 Cmu05g0339 Cre05g0402 . Csa03g01074 Chy06g00344 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010236 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 0 2 1 1 32