Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0356 ATGGAAGTTTCACCTGAATTTCGAAACCACGAACTGAAATTGTATACCAGGGCTGTTCACAATTGGAAGGGCAAACGTCTGAGAGAATATCTCATTCTTGCCCTCATGTCCAAAGTTGGAAGCATATTTTTCTGCTGCAGTTCATCAAATAAATATAACAGATTGGATGCAAAGCTGGGAAGAAAAATGGTTGAAGTCAAAAGAAATTTAGCTGGACATGACAATTTCAAGTCATTAAATGGCATAATTTTGAGATTTCCTCAATTCAAGGAGATATTACAAAACATCAGGGGTGTATTTGAACAGTATGGTGAGCTTTATTTCAGCTGTATCACTCTTTCTGAGATTCTCTTGCTCAAGATTTTCTCACATTCCCTCGCTATCTCTCTCGCAGATGAAGATTCAAATGGAAGCATCGATCGTGAAGAACTCAAGAAATGCTTACAACAGCTACAAATGCATATGACTGAGGACGAAGTTGAGGATCTTTTCCACTCTTGTGACATTGATGGAAGTGCCGGAATACAATTCAACGAGTTTATCGTTCTCCTATGTCTCATTTATCTTCTCAAAGATGAACATTCACCCACTAAATCAAAGCTGGGCTCACCTCAACTTGAAGCAACTTTTGACACAATCATCCAAGCTTTCATATTTCTAGATAAAAATGGCGACGGCAAGCTCAACCGGAAAGAAATGGTCAAGGCTTTGAATGAGGCTTCTCCATACGAGAGATCCCCTGCACGCATTACAAAAACTAGATTCAAAGAAATGGACTGGAACAACAGTGGGAAGGTGAATTTCAGGGAGTTTCTATTTGGTTTCATTAACTGGAGGGCGTGGACTGCACGTCAAGATCAGTCAAAATCTGAGGGCCACGTGGCAATCCCAACGGCGCCGCGTCTGGCGTGGAAATATCCTAACATGGAAATGGCTTGTGAAGCTATACAACTATGGACATTTAATGGATTAGTGGCTGCATTTCTTGATCTTGGTATAGCTTTTTTATTATTATGTGCATCGAGTCTTGTTTTCTTTACATCCAAATTTCTTGCACTGTTTGGATTATGTTTGCCTTGCCCTTGTGATGGGGTATTTGGGAACCTTAGTAGTGATCACTGCTTCCAAAAGTTACTTGTGGATCGTTCGTCCAGAAAAATATCTTCAGTCCTACATTCGACTAGAAAAAAGTTCCCATTAAATTCCGTGTGGGATGAGCCAAAATGTTGTTTTAAGTCAATGTTGGTGCACGAGAGGAATGTCAAGGAGGCACATGTTGAATTGGAAGGTGAAACATCAAGTAGTTCCTCTTTTAAAACCAGATCACAACAAGGTATGATTTATAGAGACTTTCCCAGTGTCAACGAATTGCATTGTGGAGGTGGTGTGGATCGCAGGAAGGTCATATCAGTGTCTCCGAACGACATTTCACAGTCAGATGTGGAACTGGAAGACCTTTCTCATTCTCCTTCAAGCTTCAGTGGATTTGGGGATCACAATACCGAGGATGGCTTCTTTTCTGTTGATTCTGGAGATGAAAGGGAGGCTTCATCAGACAACAGCGATCAATATAAAGTATTTCCCGATCTTGAACTAGATGATTCTTATGATGAGAAAATATGCGCAGAGATGTATGAAGCATCTGTTGGAGAGGCTGGGAACAGGTGCAGAGGGGAGTTATGTTTGGATGGTAATGAGAGTGATACAATCAAACTATTGGAGCAAGCACTTGAAGAAGAGCAGACAGCACGTGCTACCCTGTACCTGGAGCTTGAGAAAGAGAGAAGTGCTGCTGCCACCGCTGCCGATGAGGCCATGGCTATGATATTGCGTCTACAGGAAGAGAAGGCATCAATAGAAATGGATGCTAGGCAATACCAGAGGATGATAGAGGAGAAGACTGCTTATGATGCGGAAGAAATGAGTATTCTTAAAGAAATTCTAGTGAGGAGAGAGCGGGAAATGCATTTCTTAGAGAAGGAAATTGAAGCTTTTCGGAAAAGTTTCTTTGACGATGATGGAGTGGATGTTGATATGCTTGACTCAGAATTTACACCTGCAAGGACCCCTTCTTTTCCTTATCCAACTGAAGATCCATCGCATATGCTTCAATGCATGAATAGATCCACTAGAGACGAGCAAGATTCCAATTACAAAATACATTCTTTGCAATATGAGATACCATCAGTGGAGTCACGAAACTTAACTTTCGAGTTTGGGGAAGAGTCACCATTTATTCAAGCGGATGAATTTGCTGATGCTGCAAAAGCTAGGGGAATGTTGTTGCACCAAGTTGCTGATAACTTCAAGGGCAGTGAAGAGATTGACTATGAGTTACAAGGAAAGGGCATGGTAGAGGATGAGAAGTTATACACTGTACCAGGAGAAGTAAATGAACTGGATCCATATCTGCAAAGCAATGAGTCAAATGGTTTAGGTAAGGTTGAGAAATGCACAGAATTAATTGCAGATGAACAAGAAAAAGTTGACGAAGTTTCATATGACGAATCAGCATTGGCTAAAACAATTCTTCCTTGTCTTGAGTACAATTTGGAAAAGATTGGTGACCATCAAAAGATGCGGACAAGAGATCTTGACTCTGTGAATGCTACAGATCCCCATCCTCATGATATTCATGTCATTGAAGATGAAGCTAGAATTTCAAATGAAGCAATTGCTAATGCAAGTGAAGAACCATTGGTTAACAGTACCTCGAGTATTCCAGTTAAATGTGACAGTCCATCCTTCAGCTTGTTGCAGAGTGAACTAGAAATCCCAAGAACCAGCTCAGATGCCTCTGGAAGATTTCCACCAATGGCTCGTTCTCGAAGCAATTCCGTGCGTTCTGAATTGCGTAGAAATTCGATGTCTGCTGTCGATTATGAAAGGTCAAAAATTGGCAATGAAGTTGAGTGGCTCAGAGGAAGGCTAAAGATTGTTCAAGAGGGAAGAGAAAAACTCAAGTTCTCTGTGGAGTACAAAGAGAATGAGAACAATCAGTTGCAACTTTTAGAGAACATAGCAAATCACCTTCGCGAAATCCGACAACTAACGGATCCTAGAAAGGCATCTTTGCAGGCTCCATTGCCTCCATCCTCTAAGGATGTGTCAAAGAAACGTTGCTGGCGAAGCTCATCCTTGAGCATTCATAGGAGCAGCTAG 3162 41.37 MEVSPEFRNHELKLYTRAVHNWKGKRLREYLILALMSKVGSIFFCCSSSNKYNRLDAKLGRKMVEVKRNLAGHDNFKSLNGIILRFPQFKEILQNIRGVFEQYGELYFSCITLSEILLLKIFSHSLAISLADEDSNGSIDREELKKCLQQLQMHMTEDEVEDLFHSCDIDGSAGIQFNEFIVLLCLIYLLKDEHSPTKSKLGSPQLEATFDTIIQAFIFLDKNGDGKLNRKEMVKALNEASPYERSPARITKTRFKEMDWNNSGKVNFREFLFGFINWRAWTARQDQSKSEGHVAIPTAPRLAWKYPNMEMACEAIQLWTFNGLVAAFLDLGIAFLLLCASSLVFFTSKFLALFGLCLPCPCDGVFGNLSSDHCFQKLLVDRSSRKISSVLHSTRKKFPLNSVWDEPKCCFKSMLVHERNVKEAHVELEGETSSSSSFKTRSQQGMIYRDFPSVNELHCGGGVDRRKVISVSPNDISQSDVELEDLSHSPSSFSGFGDHNTEDGFFSVDSGDEREASSDNSDQYKVFPDLELDDSYDEKICAEMYEASVGEAGNRCRGELCLDGNESDTIKLLEQALEEEQTARATLYLELEKERSAAATAADEAMAMILRLQEEKASIEMDARQYQRMIEEKTAYDAEEMSILKEILVRREREMHFLEKEIEAFRKSFFDDDGVDVDMLDSEFTPARTPSFPYPTEDPSHMLQCMNRSTRDEQDSNYKIHSLQYEIPSVESRNLTFEFGEESPFIQADEFADAAKARGMLLHQVADNFKGSEEIDYELQGKGMVEDEKLYTVPGEVNELDPYLQSNESNGLGKVEKCTELIADEQEKVDEVSYDESALAKTILPCLEYNLEKIGDHQKMRTRDLDSVNATDPHPHDIHVIEDEARISNEAIANASEEPLVNSTSSIPVKCDSPSFSLLQSELEIPRTSSDASGRFPPMARSRSNSVRSELRRNSMSAVDYERSKIGNEVEWLRGRLKIVQEGREKLKFSVEYKENENNQLQLLENIANHLREIRQLTDPRKASLQAPLPPSSKDVSKKRCWRSSSLSIHRSS 1053
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3023207 3030676 - CmPI595203_05g003560.1 Cmu05g0356 415270

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0356 1053 ProSitePatterns EF-hand calcium-binding domain. 221 233 IPR018247 -
Cmu05g0356 1053 SUPERFAMILY EF-hand 129 276 IPR011992 -
Cmu05g0356 1053 Pfam EF-hand domain pair 211 273 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 Pfam EF-hand domain pair 130 181 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 CDD EFh 127 184 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 Coils Coil 994 1014 - -
Cmu05g0356 1053 MobiDBLite consensus disorder prediction 928 951 - -
Cmu05g0356 1053 Coils Coil 648 668 - -
Cmu05g0356 1053 Pfam Zein-binding 573 662 IPR007656 -
Cmu05g0356 1053 ProSiteProfiles EF-hand calcium-binding domain profile. 127 154 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 PANTHER BNAANNG28530D PROTEIN 557 1035 - -
Cmu05g0356 1053 MobiDBLite consensus disorder prediction 480 499 - -
Cmu05g0356 1053 SMART efh_1 212 240 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 SMART efh_1 123 151 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 SMART efh_1 250 278 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 SMART efh_1 159 187 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 Gene3D - 94 184 - -
Cmu05g0356 1053 Coils Coil 602 629 - -
Cmu05g0356 1053 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Cmu05g0356 1053 ProSiteProfiles EF-hand calcium-binding domain profile. 208 243 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 ProSiteProfiles GTD-binding domain profile. 568 666 IPR007656 -
Cmu05g0356 1053 CDD EFh 213 275 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 Gene3D - 186 285 - -
Cmu05g0356 1053 ProSiteProfiles EF-hand calcium-binding domain profile. 155 190 IPR002048 GO:0005509(InterPro)
Cmu05g0356 1053 MobiDBLite consensus disorder prediction 1022 1053 - -
Cmu05g0356 1053 Coils Coil 570 590 - -
Cmu05g0356 1053 MobiDBLite consensus disorder prediction 480 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0356 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0356 Cmu-Chr5:3023207 Cmu10g1263 Cmu-Chr10:5520535 1.30E-49 dispersed
Cmu07g0131 Cmu-Chr7:1177486 Cmu05g0356 Cmu-Chr5:3023207 3.20E-06 dispersed
Cmu05g0356 Cmu-Chr5:3023207 Cmu02g1678 Cmu-Chr2:30602387 2.80E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g895 . . . . . . . . . . . Cma14g01895 Car06g01066 Car14g01697 Sed12g0379 Cpe08g00398 Cpe03g01594 Bhi01g00233 Tan10g0519 Cmetu06g0638 . . . . . . . . . . . . . Cone7ag0391 . Lsi05g01843 . . Cme06g00380 . . . . . . . . . Cmo06g01252 Cmo14g01947 . . . . . . . . . . . . . Cla05g00347 Cam05g0377 Cec05g0382 Cco05g0382 Clacu05g0371 Cmu05g0356 Cre05g0420 . Csa03g01094 Chy06g00363 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006891 1 2 1 1 1 1 0 1 1 1 1 1 2 0 1 2 1 1 2 1 1 1 1 1 1 1 0 8 1 0 37