Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0357 ATGCTCTCTGGGTTTTCACAGGAACCGGCCGGAATGTACTCGGCCATTCCGGCGCTGCCGATGGACAGCGGCGGCGGTAAGTTTCAGGGTTCTTTAGATGGAACGAATCTTCCCGGCGACGCTTGTTTGGTTCTCACGTCGGATCCGAAGCCGCGCCTCCGCTGGACGGCGGAGCTCCATGAACGATTCGTTGACGCCGTCACTCAGCTCGGCGGCCCCGACAAGGCAACGCCAAAAACAATTATGAGAACAATGGGAGTAAAAGGTCTCACCCTTTATCACTTAAAATCACACCTCCAGAAATATCGGCTCGGGAAGCAATCGTTCAAGGAATCAACCGAGAACTCAAAGGATGCTTCTTGCATTGCAGAAAGTCAAGAAACAAGTTCCTCGTCGTCGCCATCGTCGAGAATAATGACACAGGATCTGAATGATGGTTTCCAAGTCACGGAGGCTTTACGAGTGCAAATGGAGGTTCAAAGAAGGCTGCACGAGCAGCTGGAGGTTAATCTCTCATTTGTTCTTCTCGAACAAACCCGAATCTGTTGCGATAAATCTGAGAAAACTCACTGTTTTCCATTTTCTACTCCCTGCTTTTACTGTAAGCAGGTGCAGCGTCATCTTCAACTTCGCATTGAAGCACAAGGCAAATACTTGCAGTCGATACTCGAGCGGGCTTGTCAAGCATTGAGTGATCAGGCTGCAGCGTCCGCCGGACTCGAAGCTGCCAGAGAAGAGCTCTCTGAACTTGCAATCAAAGTCTCCAATGATTCTAAAGAGATGGCACCATTGGAGACTCAAAAAGTGCTTCCCTTTTCAGAACTTGCTGCTGCTCTAGAAAATCGAAAGGCTCCTACTGTTATGCCTCGAATAGGCGATTGCTCGATGGATAGCTGCCTGACATCAGCTGGTAGCCCAGTTTCCCCAATCAGAGTAGGATCAACTGCCACTGCAATGAAGAGACCGAGACCAGTTTTTAGTCATGGAGATTCAATGACTCTCGAGGGCAATGCCCGACACGATGTTGAATGGATGATGAGTAATATTGGATGA 1053 49.29 MLSGFSQEPAGMYSAIPALPMDSGGGKFQGSLDGTNLPGDACLVLTSDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSFKESTENSKDASCIAESQETSSSSSPSSRIMTQDLNDGFQVTEALRVQMEVQRRLHEQLEVNLSFVLLEQTRICCDKSEKTHCFPFSTPCFYCKQVQRHLQLRIEAQGKYLQSILERACQALSDQAAASAGLEAAREELSELAIKVSNDSKEMAPLETQKVLPFSELAAALENRKAPTVMPRIGDCSMDSCLTSAGSPVSPIRVGSTATAMKRPRPVFSHGDSMTLEGNARHDVEWMMSNIG 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3032904 3036646 - CmPI595203_05g003570.1 Cmu05g0357 415271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0357 350 Gene3D - 49 107 - -
Cmu05g0357 350 Pfam Myb-like DNA-binding domain 52 103 IPR001005 -
Cmu05g0357 350 MobiDBLite consensus disorder prediction 115 139 - -
Cmu05g0357 350 NCBIfam myb-like DNA-binding domain, SHAQKYF class 50 105 IPR006447 GO:0003677(InterPro)
Cmu05g0357 350 FunFam Myb family transcription factor 49 107 - -
Cmu05g0357 350 Pfam MYB-CC type transfactor, LHEQLE motif 148 169 IPR025756 -
Cmu05g0357 350 Pfam MYB-CC type transfactor, LHEQLE motif 204 228 IPR025756 -
Cmu05g0357 350 Coils Coil 240 260 - -
Cmu05g0357 350 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 28 314 IPR046955 GO:0003700(InterPro)
Cmu05g0357 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 107 IPR017930 -
Cmu05g0357 350 SUPERFAMILY Homeodomain-like 50 107 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2051 Cmu-Chr1:33535550 Cmu05g0357 Cmu-Chr5:3032904 3.80E-42 dispersed
Cmu02g1871 Cmu-Chr2:32636481 Cmu05g0357 Cmu-Chr5:3032904 2.20E-41 dispersed
Cmu05g0357 Cmu-Chr5:3032904 Cmu07g0272 Cmu-Chr7:2695056 2.70E-36 dispersed
Cmu05g0357 Cmu-Chr5:3032904 Cmu09g2179 Cmu-Chr9:37863001 1.20E-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6099 PF00249 Myb_DNA-binding 2.20E-07 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0357 - - - 0.0