Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0361 ATGGAGAAAGACGATAACTACTCGAACGAAGCTGGTATGCCTCCAAGTTTCTCCAGCCACCAAGATCTCTACAATAACCAAGACCAATTCATGAGGTCTCGCCCCTTCGAAACCTCCGCCGACAATGCCACCGGAATCCTCACCTACTTTCCGGCCAACCCTCCGCCGCTGCAGCCAATAACCTCTCCGGACAAGCTCAGCTTTGCCGAGGTTATGCAGTTCGCCGACTTCGGTCCGAAACTCAGTCTCAACCGATTCGACGAGGACGACGAACCTCCCGGTATCGACCCGGTCTATTTCCTGAAGTTCCCGGTTCTGAATAACGAGAGGGCGGAGGAGGCGGCGGCGGCCGGGGAGGAGGAAGCAGCGGAGACGGGAGGGAGATTAATTGTTGGGGAATTAGAGGAGGAGGATAATTTTAGGAATAATAATAATATTAATAATAACGTTAATAATAATAATAATAATAATAATAATAAAAGGAAAAGAGGACGGACGGTGAAGACAAGTGAAGAAGTGGAGAGCCAAAGGATGACCCATATTGCGGTGGAGAGAAATCGAAGAAAGCAGATGAATGAGCATCTCCGGGTTTTGCGCTCCCTCATGCCTGGTTCTTACGTTCAAAGGGGAGATCAAGCTTCCATAATCGGCGGAGCAATCGAGTTCGTGAGAGAGCTAGAGCAACTGTTGCAGTGTCTAGAATCCCAAAAACGACGTCGTGTATTAGGAGAACCACCACTGGTGCAGGGGGCGGACACACCGGCGTCGCAGCAACCACCATTTGTACCGGGTAATTTTCCAGGTCATCAAAACGAGGGGCAAATATTAGAAACGACAGCGGAGAGTAAATCATGCCTGGCTGACGTGGAAGTGAAGGTGGTAGGGTTCGACGCTATGATAAAAATCTTGTCGAGAAGACGACCGGGGCAGCTGATTAAAGCCATCGCCGCTCTCGAAGATCTTCAACTAAATATTCTTCATACAAATATCACCACCATTGAACAGACTGTTCTTTATTCTTTCAACGTCAAGATAGCAAGTGAGTCAAGATTTACAGCAGAAGATATAGCGAGCTCAGTTCAACAAATATTCGGTTTTATTCATGCAAACACCGGCATGTGA 1122 47.95 MEKDDNYSNEAGMPPSFSSHQDLYNNQDQFMRSRPFETSADNATGILTYFPANPPPLQPITSPDKLSFAEVMQFADFGPKLSLNRFDEDDEPPGIDPVYFLKFPVLNNERAEEAAAAGEEEAAETGGRLIVGELEEEDNFRNNNNINNNVNNNNNNNNNKRKRGRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEPPLVQGADTPASQQPPFVPGNFPGHQNEGQILETTAESKSCLADVEVKVVGFDAMIKILSRRRPGQLIKAIAALEDLQLNILHTNITTIEQTVLYSFNVKIASESRFTAEDIASSVQQIFGFIHANTGM 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3070903 3076137 - CmPI595203_05g003610.1 Cmu05g0361 415275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0361 373 SMART finulus 181 232 IPR011598 GO:0046983(InterPro)
Cmu05g0361 373 Pfam Helix-loop-helix DNA-binding domain 176 227 IPR011598 GO:0046983(InterPro)
Cmu05g0361 373 MobiDBLite consensus disorder prediction 11 27 - -
Cmu05g0361 373 MobiDBLite consensus disorder prediction 164 178 - -
Cmu05g0361 373 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
Cmu05g0361 373 Coils Coil 143 163 - -
Cmu05g0361 373 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 226 IPR011598 GO:0046983(InterPro)
Cmu05g0361 373 MobiDBLite consensus disorder prediction 140 178 - -
Cmu05g0361 373 MobiDBLite consensus disorder prediction 141 160 - -
Cmu05g0361 373 CDD ACT_UUR-ACR-like 299 363 - -
Cmu05g0361 373 Gene3D - 173 242 IPR036638 GO:0046983(InterPro)
Cmu05g0361 373 PANTHER TRANSCRIPTION FACTOR FAMA 102 365 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cmu05g0361 373 FunFam Basic helix-loop-helix transcription factor 166 241 - -
Cmu05g0361 373 MobiDBLite consensus disorder prediction 1 27 - -
Cmu05g0361 373 CDD bHLH_AtFAMA_like 178 246 - -
Cmu05g0361 373 ProSiteProfiles ACT domain profile. 299 373 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0002 Cmu-Chr5:72533 Cmu05g0361 Cmu-Chr5:3070903 2.00E-42 dispersed
Cmu05g0361 Cmu-Chr5:3070903 Cmu09g1128 Cmu-Chr9:11802742 1.80E-35 dispersed
Cmu05g0361 Cmu-Chr5:3070903 Cmu08g1073 Cmu-Chr8:23002440 4.00E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6100 PF00010 HLH 7.60E-10 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0361 K26213 - csv:101214530 590.497