Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0385 ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAGCTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTCCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCTATTTCCATTTTCGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG 1350 47.56 MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGAAEKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3284639 3289253 + CmPI595203_05g003850.1 Cmu05g0385 415299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0385 449 SUPERFAMILY Pectin lyase-like 77 444 IPR011050 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Cmu05g0385 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Cmu05g0385 449 SMART amb_all 175 372 IPR002022 -
Cmu05g0385 449 PANTHER PECTATE LYASE 18-RELATED 22 446 IPR045032 GO:0030570(InterPro)
Cmu05g0385 449 FunFam Pectate lyase 100 442 - -
Cmu05g0385 449 Gene3D - 100 442 IPR012334 -
Cmu05g0385 449 Pfam Pectate lyase 186 364 IPR002022 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1292 Cmu-Chr4:27249964 Cmu05g0385 Cmu-Chr5:3284639 6.20E-79 dispersed
Cmu05g0385 Cmu-Chr5:3284639 Cmu05g2187 Cmu-Chr5:31318746 2.60E-153 dispersed
Cmu03g0940 Cmu-Chr3:4044022 Cmu05g0385 Cmu-Chr5:3284639 4.00E-177 transposed
Cmu08g1687 Cmu-Chr8:28428660 Cmu05g0385 Cmu-Chr5:3284639 5.70E-173 transposed
Cmu09g1873 Cmu-Chr9:34862403 Cmu05g0385 Cmu-Chr5:3284639 5.30E-169 transposed
Cmu05g0385 Cmu-Chr5:3284639 Cmu06g0763 Cmu-Chr6:9141077 5.30E-215 wgd
Cmu05g0385 Cmu-Chr5:3284639 Cmu07g0223 Cmu-Chr7:2223283 1.50E-204 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0385 K01728 - csv:101218188 850.121