Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu05g0385 | ATGGCAATGGCGGAATCTGGAGGATGGATTCGTTTGTTTCTCCTCGTGGTGTTCATGTTGTTCGTCGGAACAATTGCCAGAGTTCCCAAAGAGATTCCTGAAATTGAGAATGGAGCAGCTGAGAAGTTGCAGAGCTCAAGCAACTCATCAATGGCAGTGAGGTTGGAAGAGGCTGAGGCTGAGGCTCTCGATAATAAGCATGCTGTGGACAACCCAGAAGAGATCGCTGCTATGGTTGACATGAGTATCCGCAATGCCACTGCGAGGAGGGAGCTTGGCTTCTTCTCTTGTGGAACCGGCAATCCTGTTGATGACTGCTGGCGTTGCGACCCCAATTGGCAACAAAACCGCAAACGTCTGGCAGATTGTGGCATTGGCTTTGGCCGGAATGCCATCGGTGGTCGTGATGGTCGATTCTACGTCGTCACTGACTCCGGCGACGATGACCCTGTAAACCCAAAGCCTGGCACTTTGCGACATGCCGTTATCCAGGATGAACCTCTCTGGATTGTGTTCAAGAGAGACATGGTGATTCAGCTGAAACAAGAGCTGATTATGAACAGTTTCAAGACAATTGATGCCCGTGGGACCAATGTCCACATTGCTAATGGTGCTTGCATAACAATCCAGTTTGTGACCAATGTCATTGTCCATGGTCTAAACATCCATGACTGCAAACCCACTGGAAACGCCATGGTAAGGAGCTCACCCAATCACGTTGGGTGGAGAACAATGGCTGATGGTGATGCTATTTCCATTTTCGGATCAAGTCATATTTGGATCGATCACAATTCACTCTCTAATTGTGCTGATGGCCTCGTTGATGCTGTCATGGGATCCACTGCAATTACCATCACCAACAATTACTTCACCCACCACAATGAGGTTATGTTATTGGGACATAGTGATTCTTACGTTAGAGATAAACAAATGCAAGTGACCATCGCTTACAATCACTTTGGAGAAGGACTCATCCAAAGAATGCCAAGGTGTAGACACGGATACTTCCATGTGGTGAACAATGATTATACTCACTGGGAGATGTACGCCATTGGTGGAAGTGCAAATCCAACCATCAATAGCCAGGGTAACAGATATGCTGCTCCAACCAACCCTTTTGCTAAAGAGGTGACAAAGAGAGTTGAAACAGCTGAAACTGAATGGAAAAATTGGAATTGGAGATCAGAGGGAGACCTATTGTTGAATGGTGCCTTTTTCACTCCATCTGGTGCAGGGGCCTCAGCAAGCTATGCTAGAGCCTCAAGCTTGGGAGCTAAATCTTCGTCCATGGTTGGTACTATAACATCCAACGCCGGTGCACTTTCCTGCCGGAGAGGCCATCCATGCTAG | 1350 | 47.56 | MAMAESGGWIRLFLLVVFMLFVGTIARVPKEIPEIENGAAEKLQSSSNSSMAVRLEEAEAEALDNKHAVDNPEEIAAMVDMSIRNATARRELGFFSCGTGNPVDDCWRCDPNWQQNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDEPLWIVFKRDMVIQLKQELIMNSFKTIDARGTNVHIANGACITIQFVTNVIVHGLNIHDCKPTGNAMVRSSPNHVGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITITNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAETEWKNWNWRSEGDLLLNGAFFTPSGAGASASYARASSLGAKSSSMVGTITSNAGALSCRRGHPC | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3284639 | 3289253 | + | CmPI595203_05g003850.1 | Cmu05g0385 | 415299 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu05g0385 | 449 | SUPERFAMILY | Pectin lyase-like | 77 | 444 | IPR011050 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 349 | 368 | IPR018082 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 147 | 172 | IPR018082 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 247 | 268 | IPR018082 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 123 | 140 | IPR018082 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 420 | 443 | IPR018082 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 183 | 199 | IPR018082 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - | |
Cmu05g0385 | 449 | PRINTS | Pollen allergen Amb family signature | 391 | 415 | IPR018082 | - | |
Cmu05g0385 | 449 | SMART | amb_all | 175 | 372 | IPR002022 | - | |
Cmu05g0385 | 449 | PANTHER | PECTATE LYASE 18-RELATED | 22 | 446 | IPR045032 | GO:0030570(InterPro) | |
Cmu05g0385 | 449 | FunFam | Pectate lyase | 100 | 442 | - | - | |
Cmu05g0385 | 449 | Gene3D | - | 100 | 442 | IPR012334 | - | |
Cmu05g0385 | 449 | Pfam | Pectate lyase | 186 | 364 | IPR002022 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu04g1292 | Cmu-Chr4:27249964 | Cmu05g0385 | Cmu-Chr5:3284639 | 6.20E-79 | dispersed | |
Cmu05g0385 | Cmu-Chr5:3284639 | Cmu05g2187 | Cmu-Chr5:31318746 | 2.60E-153 | dispersed | |
Cmu03g0940 | Cmu-Chr3:4044022 | Cmu05g0385 | Cmu-Chr5:3284639 | 4.00E-177 | transposed | |
Cmu08g1687 | Cmu-Chr8:28428660 | Cmu05g0385 | Cmu-Chr5:3284639 | 5.70E-173 | transposed | |
Cmu09g1873 | Cmu-Chr9:34862403 | Cmu05g0385 | Cmu-Chr5:3284639 | 5.30E-169 | transposed | |
Cmu05g0385 | Cmu-Chr5:3284639 | Cmu06g0763 | Cmu-Chr6:9141077 | 5.30E-215 | wgd | |
Cmu05g0385 | Cmu-Chr5:3284639 | Cmu07g0223 | Cmu-Chr7:2223283 | 1.50E-204 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu05g0385 | K01728 | - | csv:101218188 | 850.121 |