Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0396 ATGTCTTTCCTTGAAGAATTTCAAGCCAACCTGGAATCACTACCCAACATTCTTCAAAAGAAGTATGCTTTGCTGCGTGATTTAGATCAAAGTTTGCAAGGACTAGTAAAACAGAATGAGCAACGCTGTGAGCAAGAAATTGAGGATATTAAGCGGGGAGTTAAATGTGGTAATATTACTCCTGATACTTCACTCATCAGATTCTCCGATGAAGCTCTTGATGAGCAGAAGCATAGCATCAGAATTGCAGATGAAAAGGTTGCCCTTGCTGTTCAGGCATATGATTTGGTAGATACCCACATACAACAACTTGACCAGTATTTGAAGAATTTTGATGAAAAGCTTCGTCAAGAAAGAGGAAGTGCTGCTGCAACTGGGTTACCAGCTCCCAATGTGGATGGTAACACAAAATCTGGACGGGTAACAGAAGGTGGTAGAGGCGGGCGTAAAAAAAGAAGTGGCCAGGCTGCTGCTACAGAAGTACCAACTGCTGCAACTCCCACAGGAATGGAACTTGAATTACCAGTTGATCCAAATGAACCAACTTACTGTCTCTGCAACCAAGTTAGTTACGGGGAGATGGTTGCCTGTGATAACCCTAATTGCAAGATTGAATGGTTTCATTTTGGCTGTGTCGGTCTAAAAGAACAACCAAAAGGAAAATGGTACTGTTCTGATTGTGTAGGCACGAAAGAAAGCAATCTAGAAGATCCTCCATTAAAGATGGAAGAAGTGAAACTCCATGGGATGTGGGCAAGTCCTTTTACTTACAGAGTGAAATGGGGTTTGGAGCTTAAGGGCATACCATACCAATACGTAGAAGAAGATATCACCAACAAATCTCCATTGCTGCTTCACTACAATCCTCTTCACAAGAAGGTTCCTGTGCTCGTTCATGGCGGAAAACCAGTGTGCGAGTCCATCGTCATCCTCGAATACATGGATGAAATATGGCCTCAATATCCTCTCTTTCCAATCAATCCCTTCGATAGAGCAATGGCTCGCTTTTGGATTAAATATACAGACAACAAGTTATTTGGAAATCGGCTTCTGTTCGGTTCCGGCAGCGGCGAAGAAGCTGAAAAAGCTAGGGCGGAGGGAATTGAATTCCTGAGAACAATCGAAGAACAATGCCTTGGCGACAAGAAATTCTTCGCCGGAGAGGCGATCGGCGCCCTGGATTTGGCGTTCGGAGGAATCGCTCAGTGGCTACCAGTTCTTGAAGAAGTTTCAGGGTGGAAGCTTCTGAACGCCGATGAATTCCCTCGCTTGTACGCTTGGACCAAAAACTTCAAGGAAGCTGCTGTGATCAGAGATAACCTACCGGACGCCGACAAGTTGGCCGGACTTTACAACCGCCTGCGCGACCAGCGGCTGCGATCTGCGGCAGAGTAA 1395 45.3 MSFLEEFQANLESLPNILQKKYALLRDLDQSLQGLVKQNEQRCEQEIEDIKRGVKCGNITPDTSLIRFSDEALDEQKHSIRIADEKVALAVQAYDLVDTHIQQLDQYLKNFDEKLRQERGSAAATGLPAPNVDGNTKSGRVTEGGRGGRKKRSGQAAATEVPTAATPTGMELELPVDPNEPTYCLCNQVSYGEMVACDNPNCKIEWFHFGCVGLKEQPKGKWYCSDCVGTKESNLEDPPLKMEEVKLHGMWASPFTYRVKWGLELKGIPYQYVEEDITNKSPLLLHYNPLHKKVPVLVHGGKPVCESIVILEYMDEIWPQYPLFPINPFDRAMARFWIKYTDNKLFGNRLLFGSGSGEEAEKARAEGIEFLRTIEEQCLGDKKFFAGEAIGALDLAFGGIAQWLPVLEEVSGWKLLNADEFPRLYAWTKNFKEAAVIRDNLPDADKLAGLYNRLRDQRLRSAAE 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3378415 3384068 + CmPI595203_05g003960.1 Cmu05g0396 415310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0396 464 SFLD Main.3: Omega- and Tau-like 241 459 IPR045073 -
Cmu05g0396 464 SUPERFAMILY Thioredoxin-like 245 345 IPR036249 -
Cmu05g0396 464 Gene3D - 2 108 - -
Cmu05g0396 464 Pfam Glutathione S-transferase, C-terminal domain 358 431 IPR004046 -
Cmu05g0396 464 Gene3D - 327 462 - -
Cmu05g0396 464 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 243 322 IPR004045 -
Cmu05g0396 464 CDD ING_plant 11 108 - -
Cmu05g0396 464 FunFam Tau class glutathione S-transferase 240 326 - -
Cmu05g0396 464 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 327 464 IPR010987 -
Cmu05g0396 464 ProSitePatterns Zinc finger PHD-type signature. 184 227 IPR019786 -
Cmu05g0396 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 230 IPR013083 -
Cmu05g0396 464 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 244 450 IPR045073 GO:0004364(PANTHER)|GO:0005737(PANTHER)|GO:0006749(PANTHER)
Cmu05g0396 464 SUPERFAMILY FYVE/PHD zinc finger 165 228 IPR011011 -
Cmu05g0396 464 Gene3D Glutaredoxin 240 326 - -
Cmu05g0396 464 MobiDBLite consensus disorder prediction 120 166 - -
Cmu05g0396 464 CDD GST_N_Tau 245 318 - -
Cmu05g0396 464 CDD GST_C_Tau 328 447 IPR045074 GO:0004364(InterPro)|GO:0006749(InterPro)
Cmu05g0396 464 SMART PHD_3 183 228 IPR001965 -
Cmu05g0396 464 ProSiteProfiles Zinc finger PHD-type profile. 181 230 IPR019787 -
Cmu05g0396 464 SMART ING_2 3 111 IPR024610 -
Cmu05g0396 464 Pfam Inhibitor of growth proteins N-terminal histone-binding 3 111 IPR024610 -
Cmu05g0396 464 CDD PHD_Yng1p_like 183 227 - -
Cmu05g0396 464 FunFam Tau class glutathione S-transferase 324 461 - -
Cmu05g0396 464 SFLD Glutathione Transferase (cytosolic) 241 459 IPR040079 -
Cmu05g0396 464 SUPERFAMILY GST C-terminal domain-like 316 456 IPR036282 -
Cmu05g0396 464 FunFam Inhibitor of growth 2b 175 231 - -
Cmu05g0396 464 Pfam Glutathione S-transferase, N-terminal domain 244 316 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0396 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0571 Cmu-Chr4:19117398 Cmu05g0396 Cmu-Chr5:3378415 5.00E-19 dispersed
Cmu05g0396 Cmu-Chr5:3378415 Cmu05g0399 Cmu-Chr5:3395032 4.00E-80 dispersed
Cmu05g0396 Cmu-Chr5:3378415 Cmu05g0398 Cmu-Chr5:3391116 2.70E-76 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g829 . Blo12g00131 Bda03g01109 . Bpe04g01054 . Bma04g01035 . . . Cma06g01275 . Car06g01096 . . Cpe08g00372 . Bhi01g00022 . . . . . . . . . . . . . Cone14ag0202 Cone15ag0220 . . Lsi05g01798 . . Cme06g00422 . . . . . . . . . Cmo06g01284 . . . . . . . . . . . . . . Cla05g00384 Cam05g0418 Cec05g0423 Cco05g0423 Clacu05g0413 Cmu05g0396 Cre05g0458 . Csa03g01141 Chy06g00407 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004676 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41