Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0408 ATGAGGAGAAATGGGAGAACTGATTCGTCTCTTTGCAGTCCTTTCGTCTTCCTCCTTTCTCTGAACTCCAAAAAAATGGATTCAGGGTTCTGCGCCGCCCATCTCTCTCAGCTTCTCGGCCCCAACACAACCAACGCCACCGCCGCTGCTAATTTCATCTGCGATCAGTTCACCACCGTCACCAACAACTTCTCCGACACCAAAAATGCCCTCGACAACACCTACCTACTCTTCTCCGCCTACCTTGTCTTTTCTATGCAACTCGGCTTCGCTATGCTCTGCGCCGGCTCCGTCCGCGCCAAAAACACAATGAACATCATGCTCACCAATGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTATTACCTTTTCGGCTACGCCTTCGCCTTCGGCTCCCCGTCCAATGGCTTCATCGGCCGCCATAACTTCGGTCTCACCTCCTTTCCGACCTCCACTGCCGATTACAGCTTCTTCCTCTACCAATGGGCCTTTGCGATTGCTGCCGCCGGGATTACCAGTGGATCTATCGCCGAGCGGACTCAGTTCGTCGCCTATTTGATTTATTCCTCTGTTTTGACTGGATTCGTTTATCCGGTGGTTTCTCACTGGTTCTGGTCTCCCGATGGTTGGGCTGGGGTTATGAAATCGGATGGCGGACTGTTGTTTGGATCGGGAGTTATCGACTTCGCCGGCTCCGGCGTCGTTCATATGGTTGGAGGAGTTGCTGGTCTATGGGGCGCGTTGATCGAGGGGCCGAGAATCGGTCGATTCGACCACACCGGCCGGTCGGTGGCTCTGCGAGGGCACAGCGCTTCTTTAGTCGTTCTCGGAACTTTCATGCTCTGGTTCGGATGGTACGGTTTCAATCCAGGTTCGTTCGCGAAGATTCTCGTCCCTTACACCACCGGAAACTTCTACGGCCAGTGGAGCGCCGTCGGACGGACGGCGGTCACCACCACGCTCGCCGGATGCACGGCAGCACTCACCACGCTCTTCGGGAAGCGATTCCTCTCAGGGCACTGGAACGTGACGGACGTTTGTAACGGGCTCCTTGGGGGCTTCGCCGCCATCACCGCCGGCTGTTCCGTCGTCGAGCCATGGGCAGCAATCATTTGCGGATTCGTCGCCGCTCTCGTGCTAATAACCTGCAACCGAATCGCAGAGAAAGCAAAATACGACGATCCATTAGAAGCCGCTCAACTCCACGGCGGTTGCGGCGCGTGGGGAGTTATATTCACAGCACTCTTCGCAACGAAGGAGTACGTAACGGAAGTATACGGCGGATCGGGGCGTCCGTACGGACTCCTGATGGGCGGCGGCGGGAGGTTACTGGCAGCGCATTTGGTACAGATTTTGGTGATCGTGGGGTGGGTGAGCGCAACGATGGGGCCATTGTTCTTTGTTCTTCACAAATTGAAGCTTCTGAGAATCTCCTCTGAAGATGAAATGGCGGGAATGGATCTGACCCGCCATGGCGGATTTGCGTACATTTATCATGATGAAGATGAAGCCCAGAAAATGGGGATTCAGTTGAACAGAGTAGAACCTAAATCTGCAACTCCAACCGGAGATTATTGA 1578 55.13 MRRNGRTDSSLCSPFVFLLSLNSKKMDSGFCAAHLSQLLGPNTTNATAAANFICDQFTTVTNNFSDTKNALDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGYAFAFGSPSNGFIGRHNFGLTSFPTSTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWAGVMKSDGGLLFGSGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDHTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFAKILVPYTTGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRFLSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIICGFVAALVLITCNRIAEKAKYDDPLEAAQLHGGCGAWGVIFTALFATKEYVTEVYGGSGRPYGLLMGGGGRLLAAHLVQILVIVGWVSATMGPLFFVLHKLKLLRISSEDEMAGMDLTRHGGFAYIYHDEDEAQKMGIQLNRVEPKSATPTGDY 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3469217 3470794 - CmPI595203_05g004080.1 Cmu05g0408 415322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0408 525 PANTHER AMMONIUM TRANSPORTER 45 504 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cmu05g0408 525 SUPERFAMILY Ammonium transporter 69 477 - -
Cmu05g0408 525 Gene3D Ammonium transporter AmtB like domains 50 515 IPR029020 -
Cmu05g0408 525 Pfam Ammonium Transporter Family 75 496 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu05g0408 525 ProSitePatterns Ammonium transporters signature. 228 253 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu05g0408 525 FunFam Ammonium transporter 53 511 - -
Cmu05g0408 525 NCBIfam ammonium transporter 72 496 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0408 Cmu-Chr5:3469217 Cmu06g0746 Cmu-Chr6:8791582 9.00E-238 dispersed
Cmu05g0408 Cmu-Chr5:3469217 Cmu07g0202 Cmu-Chr7:1930535 9.70E-200 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0408 K03320 - csv:101208366 912.138