Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0415 ATGGAACCACCTCTAGGTTTACTGGGTAGCAGCGGCATTGCCAGCGCCGGCGGCTCTTCCGGAGCCTCCAACGATGAGAATTCTGTTTCCAAGGCTAAGGAGTTAAACAACAACCAGACGGATTTGTCATCCGAGGAATTTTCTTCCCCTGTTGAGGCTGAGCTCGAATTAGGGCTAGGGCTCAGTCTTGGAAATGGGGTTTCTTCTGGAAAGGGTAAACATGGTGGCTGGGGTGAGCGCGGCCGGATATTGACGGCGAAAGATTTTCCCTCGGCGATCTCTCCTGGTGGGTCGTCTTCTTCTTCTTCTTCGGCTAGATTCTCTGGCAGACCTGCTGCTGTTTCTGGTGTCAAGAGGGCGGCGGAACCTGTTAACCGCGACGGCGGTTCTCCTCCTCCGGCTGTCAGTCAGGTGGTGGGATGGCCGCCCTTGAGAGCTTACAGAATTAACAGCCTGGTTAACCAAGCTAAAAATCAAAGGGCTGGAGATGAAAAGGAGCTGCTTTCTCTCAAGAATAGTTCCAATGGTGTTTCAGAGAAGATCCATGATGGCAAAAATACGAGTGCCAGTGATACTGAAAAGGGGCCTCTAGGTTTTGTGAAAGTGTATATGGACGGAGTTCTAATTGGCAGGAAAGTGGATTTGAATGCCCATTCTAGCTATGAGACTTTGGCTCTGATGCTCGAGGATATGTTTTTTAAGTCCGCGGGAAGCGTCCCATCCACCGGCTTAAGTGGAGGTCAGGATGAACAAGCACCAAAACTCTCGAAACTTCTGACTGGCTCCTCTGAGTTTGTGCTCACCTATGAAGATAAAGAGGGAGACTGGTTGTTGGTTGGGGATGTTCCTTGGAGGATGTTCCTTGTCTCGGTTAAGAAACTTCGAATTATGAGGACATCTGAGGCAAAGGGACTCGGGTTTTCAGTTCCGGCAACGAGGAGTTACAACTTCCTCATTAACCAAAGCGCTATAAAACTTCCAAATAACAACAAGATTGAAGCTCACAAAGCATTATTTTCGATTTCATCCACCGCCATGTACTGGGTGGCAACACGAAACGTCGTTTTTTCCCCCCGGTGGCGTTTTTTGGCTCTTTTGATTGGCTTCCCTCCGCGCAACTTCACCTCATTTACTCACTCACCGGCGTTTTTTGAAAGGCAACGGCTTGAAAAGTTGCACTTTGGGAAAGGTAGAAAATATTCAAGAGGAAGCATCAAAGCTGCTAAGAAGTTTAAGGATATTAATAATGTCCAAGACGATAAGTTCCTTTCTCACATTTTATGGTGGAAAGAGATGGTGGAATCATGCAAGAAGCCGTCATCTGTCCAGCTGGTTAAGAGGCTTGACTTTTCCAATTTGCTAGGTTTAGATATTAACCTGAAAAATGGGAGTCTTAAAGAAGGAACCCTTAACTGGGAGATTTTACAGTTCAAAGCAAAGTTTCCTCGAGAAGTTTTGCTCTGTAGAGTCGGAGATTTTTATGAAGCAATTGGAATAGATGCTTGCATACTTGTAGAATACGCTGGTTTAAATCCTTTTGGAGGTCAGCGCATGGATAGTATTCCAAAAGCTGGTTGCCCTGTTGTGAATCTTCGTCAAACTTTGGATGATCTGACATGTAATGGGTTCTCAGTGTGCATAGTGGAAGAAGTTCAGGGCCCAATGCAAGCTCGTTCTCGCAAAGGACGTTTTATATCTGGGCATGCACACCCAGGCAGTCCTTATGTCTTTGGGCTCGTTGGGGTCGATCACGATCTTGACTTTCCAGAACCAATGCCTGTGGTTGGAATATCTCGATCTGCAAGGGGCTATTGCATAAGCCTTGTCATAGAGACCATGAAGACATATTCGTCAGAGGATGGTTTGACAGAAGAAGCGCTGGTTACTAAACTGCGCACTTGTCAATACCATCATTTATTTCTTCACACTTCATTAAGGAACAACTCCTCAGGCACTTGTCGCTGGGGTGAATTTGGTGAGGGTGGACGGCTATGGGGGGAATGTAATTCCAGACATTATGAGTGGTTTGATGGAAATCCTCTTGATAATTTTTTGTATAAGGTTAAAGAGCTTTATGGTCTTGATGATAAAGTTACATTTAGGAATGTAACAATATCGTCAGAGAATAGGCCACATCCATTAACACTAGGAACTGCAACACAGATTGGTGCCATACCAACAGAGGGAATACCTTGTTTGTTGAAGGTGTTGCTTCCATCAAATTGTGCTGGCCTTCCTGCATTGTATATTAGGGATCTTCTTCTCAATCCTCCTGCTTATGAGACTGCGACCACTATTCAAGCAACATGCAGGCTTATGAGCAATGTCACATGTGCAATTCCAGACTTCACTTGCTTTCCGCCAGCCAAGCTTGTGAAATTATTGGAAATGAGGGAGGCCAATCATATTGAATTCTGTAGGATGAAGAATGTACTTGACGAAATATTACACATGCATAAAAATTGTGAGTTAAACAATATCCTGAAATTGTTGATGGATCCTGCATCCGTGGCAACTGGGTTGAAAATTGACTGTGATACATTCGTCAACGAATGTGAATGGGCTTCCAGTAGAGTTGACGAAATGATTTTTCTTGGTAGTGAAAGTGATCAGAAAATCAGTTCTTATCCTATCATTCCTAACGATTTTTTCGAGGATATGGAATCTTCTTGGAAAGGTCGTGTGAAGAGGATTCACATTGAAGTATCGTGTACAGAAGTTGAAAGGGCAGCTGAAGCACTTTCCCTTGCAGTTACTGAAGATTTCGTCCCAATAATTTCAAGAATCAAGGCTACTACAGCACCACTAGGAGGTCCAAAGGGAGAAATATTGTATGCTCGAGAGCATCAATCTGTCTGGTTCAAAGGAAGACGGTTTGCACCAGCTGTATGGGCTGGAAGCCCTGGAGAAGATGAAATTAAACAATTGAAACCTGCTCTTGATTCAAAGGGAAAAAAGGTTGGGGAGGAGTGGTTTACCACGAAGAAGGTGGAGGATGCTTTAGCAAGGTACCAAGAGACCAATGCCAAAGCTAAAGCAAAAGTAGTGGATCTGCTGAGGCAACTTTCTTCTGAATTGCTAGCTAAAATTAACGTCCTAGTCTTTGCTTCCATGTTACTCATAATCGCCAGGGCGTTATTTGCTCATGTGAGTGAAGGGAGGAGGAGGAAATGGGTTTTTCCCACCCTTGTTGCACCCAGTCATAGGTCGAAGGGCATACAATCATTGGAGGGGAAAGTTGGGATGAAGCTGATTGGACTATCTCCCTATTGGTTTGATGCCGTGGAAGGCAATGCTGTGCAGAATAGTATTGAGATGGAATCGTTATTTCTTTTGACTGGTCCAAATGGGGGTGGAAAATCTAGTTTGCTTCGATCCATTTGTGCTGCTGCTTTGCTTGGGATATGTGGATTTATGGTACCAGCAGAGTCCGCCCTGATTCCCCACTTTGACTCAATTATGCTTCATATGAAATCTTTTGATAGTCCTGCTGATGGAAAAAGTTCGTTTCAGGTGGAAATGTCGGAGATGAGATCCATCATCAGTCGAGTAACAGAAAGAAGTCTTGTACTTATAGATGAAATCTGTCGCGGAACAGAGACAGCAAAAGGAACTTGTATTGCTGGGAGCATTATTGAAGCTCTTGATAAAGTAGGTTGTCTTGGTATCGTCTCCACTCACTTGCATGGAATATTCAATTTGCCTTTAGATACCAAAAACACTGTGTACAAAGCAATGGGAACCATTTGTGCTGATGGACGAACGGTTCCCACTTGGAAGTTGATTAGTGGAATATGTAGAGAGAGCCTTGCCTTTGAAACAGCGAAGAATGAAGGAATCTCTGAAGCTATAATTCAAAGGGCTGAAGATTTGTATCTCTCAAATTATGCTAAAGAAGGAATTTCAGGAAAAGAGAAGACAGATTTGAACTTTTCTGTTTCTTCTCATGCAAGCCTTAATGGCAATGGCAAATCCCATCACAAGTCAAATGGTGTTATAGTAGAAGCTGATAAGCCAAAAACAGAGACAGCTAGCAAAACAGGTGTCTTGTGGAAGAAAATTGAGGGGGCTATCACTGCAATATGCCAAAAGAAGTTGATAGAGTTCCACAAAGATAACAACACATTGGAACCTGCAGAAATTCAATGTGTTGTAATTGATGCCAAAAAGAAGCCACCTCCATCAACAATAGGTGCTTCGAGCGTGTACGTGATTCTTAGACCGGATGGTAAATTCTACGTCGGACAGACTGATGATCTGGAGGGTCGAGTCCGTTCACATCGTTTGAAGGAAGGAATGCGGGATGCTGCATTTCTTTATTTTTTGGTCCCTGGTAAGAGCTTAGCTTGCCAACTCGAAACTCTTCTCATCAATCGACTTCCTGATCACGGGTTCCAGCTAACTAATGTTGCTGATGGAAAGCACCGGAATTTCGGCACGTACAATCTCTTACCAGATAATGTGACTGTTTGTTCATAA 4479 43.87 MEPPLGLLGSSGIASAGGSSGASNDENSVSKAKELNNNQTDLSSEEFSSPVEAELELGLGLSLGNGVSSGKGKHGGWGERGRILTAKDFPSAISPGGSSSSSSSARFSGRPAAVSGVKRAAEPVNRDGGSPPPAVSQVVGWPPLRAYRINSLVNQAKNQRAGDEKELLSLKNSSNGVSEKIHDGKNTSASDTEKGPLGFVKVYMDGVLIGRKVDLNAHSSYETLALMLEDMFFKSAGSVPSTGLSGGQDEQAPKLSKLLTGSSEFVLTYEDKEGDWLLVGDVPWRMFLVSVKKLRIMRTSEAKGLGFSVPATRSYNFLINQSAIKLPNNNKIEAHKALFSISSTAMYWVATRNVVFSPRWRFLALLIGFPPRNFTSFTHSPAFFERQRLEKLHFGKGRKYSRGSIKAAKKFKDINNVQDDKFLSHILWWKEMVESCKKPSSVQLVKRLDFSNLLGLDINLKNGSLKEGTLNWEILQFKAKFPREVLLCRVGDFYEAIGIDACILVEYAGLNPFGGQRMDSIPKAGCPVVNLRQTLDDLTCNGFSVCIVEEVQGPMQARSRKGRFISGHAHPGSPYVFGLVGVDHDLDFPEPMPVVGISRSARGYCISLVIETMKTYSSEDGLTEEALVTKLRTCQYHHLFLHTSLRNNSSGTCRWGEFGEGGRLWGECNSRHYEWFDGNPLDNFLYKVKELYGLDDKVTFRNVTISSENRPHPLTLGTATQIGAIPTEGIPCLLKVLLPSNCAGLPALYIRDLLLNPPAYETATTIQATCRLMSNVTCAIPDFTCFPPAKLVKLLEMREANHIEFCRMKNVLDEILHMHKNCELNNILKLLMDPASVATGLKIDCDTFVNECEWASSRVDEMIFLGSESDQKISSYPIIPNDFFEDMESSWKGRVKRIHIEVSCTEVERAAEALSLAVTEDFVPIISRIKATTAPLGGPKGEILYAREHQSVWFKGRRFAPAVWAGSPGEDEIKQLKPALDSKGKKVGEEWFTTKKVEDALARYQETNAKAKAKVVDLLRQLSSELLAKINVLVFASMLLIIARALFAHVSEGRRRKWVFPTLVAPSHRSKGIQSLEGKVGMKLIGLSPYWFDAVEGNAVQNSIEMESLFLLTGPNGGGKSSLLRSICAAALLGICGFMVPAESALIPHFDSIMLHMKSFDSPADGKSSFQVEMSEMRSIISRVTERSLVLIDEICRGTETAKGTCIAGSIIEALDKVGCLGIVSTHLHGIFNLPLDTKNTVYKAMGTICADGRTVPTWKLISGICRESLAFETAKNEGISEAIIQRAEDLYLSNYAKEGISGKEKTDLNFSVSSHASLNGNGKSHHKSNGVIVEADKPKTETASKTGVLWKKIEGAITAICQKKLIEFHKDNNTLEPAEIQCVVIDAKKKPPPSTIGASSVYVILRPDGKFYVGQTDDLEGRVRSHRLKEGMRDAAFLYFLVPGKSLACQLETLLINRLPDHGFQLTNVADGKHRNFGTYNLLPDNVTVCS 1492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3524334 3545077 - CmPI595203_05g004150.1 Cmu05g0415 415329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0415 1492 ProSitePatterns DNA mismatch repair proteins mutS family signature. 1188 1204 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cmu05g0415 1492 SUPERFAMILY DNA repair protein MutS, domain I 463 573 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cmu05g0415 1492 Coils Coil 994 1021 - -
Cmu05g0415 1492 CDD ABC_MutS_homologs 1097 1280 - -
Cmu05g0415 1492 MobiDBLite consensus disorder prediction 92 109 - -
Cmu05g0415 1492 SMART mutATP5 1107 1293 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cmu05g0415 1492 SUPERFAMILY GIY-YIG endonuclease 1400 1463 IPR035901 -
Cmu05g0415 1492 PANTHER MUTL PROTEIN ISOFORM 1 346 1489 IPR053276 -
Cmu05g0415 1492 Pfam AUX/IAA family 119 306 IPR033389 -
Cmu05g0415 1492 Gene3D DNA repair protein MutS, domain I 464 569 IPR016151 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cmu05g0415 1492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1098 1291 IPR027417 -
Cmu05g0415 1492 Coils Coil 153 173 - -
Cmu05g0415 1492 Gene3D - 1086 1365 IPR027417 -
Cmu05g0415 1492 Gene3D - 193 312 - -
Cmu05g0415 1492 Pfam MutS domain V 1111 1291 IPR000432 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Cmu05g0415 1492 MobiDBLite consensus disorder prediction 88 136 - -
Cmu05g0415 1492 MobiDBLite consensus disorder prediction 1 50 - -
Cmu05g0415 1492 MobiDBLite consensus disorder prediction 13 47 - -
Cmu05g0415 1492 FunFam DNA mismatch repair protein 1081 1361 - -
Cmu05g0415 1492 SUPERFAMILY CAD & PB1 domains 195 297 - -
Cmu05g0415 1492 ProSiteProfiles PB1 domain profile. 197 301 IPR053793 -
Cmu05g0415 1492 Pfam MutS domain I 476 565 IPR007695 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0415 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0415 Cmu-Chr5:3524334 Cmu06g0916 Cmu-Chr6:12820676 6.70E-28 dispersed
Cmu05g0415 Cmu-Chr5:3524334 Cmu06g0726 Cmu-Chr6:8510552 3.10E-65 wgd
Cmu05g0415 Cmu-Chr5:3524334 Cmu07g0193 Cmu-Chr7:1864293 9.60E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g788 Blo01g00304 . . Bda08g00002 . Bpe14g01286 . Bma05g01256 . Cmo17g00135 . Cma14g01847 . Car14g01655 . . Cpe03g01547 . . . . . . . Cla06g00701 Cam06g0752 Cec06g0758 Cco06g0770 Clacu06g0743 Cmu06g0726 Cre06g1503 Cone14ag0184 Cone15ag0193 . . Lsi05g01777 Csa02g01024 Chy05g00286 Cme06g00445 . . . Bda13g00034 . . Bma02g00747 . . . Cmo14g01891 . Cma17g00132 . Car17g00118 Cpe12g00116 . . . . . . . . Cla05g00403 Cam05g0439 Cec05g0447 Cco05g0447 Clacu05g0436 Cmu05g0415 Cre05g0477 Lsi09g01192 Csa03g01162 Chy06g00425 Cme05g00622
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010615 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6105 PF02309 AUX_IAA 4.20E-56 CL0072 Cmu TR