Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0453 ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGTTTCCATCTAATCTTCAAGACTCTCTACTGTACCCTATTGTTCTCATCCTTTATTTCAAGAAAAGGCCCATCCCAGTCAGAGTCTGGAGAACGCTTCCATTACCAGATATTTTGGTTTGGCAAGATGGTGCCTTTCCTAATCCCAGACTCTTTGCCCATCAGTTCTCTGGTGTGAATCTACAAAATGGAAAGCAGATTCAAGTGAAAGATGGTGAACGGCCGTCAATGAATATCGACATTCACGCTATAGGGAATGTATATTCTGAGCTTTTTATTACGGAAGCTCTTCGTTTCTTCTGCCTGATTTCTGGCTTGAATGGAATTTGCGATCATTGCCATCATCGCCCTGGAAGGTGTGGATCACAGGCAGCATTTCATGATTTGAATCCTTATAGGAATCGACGCCGCACCTGGATTGAGAACGGAATTGTCATGGAGCATATTATAGGTGGGAAGTTTAAGCTTGGAAGGAAGATCGGCAGCGGATCATTTGGAGAACTTTATTTGGGTACAAATGTACAAACTGGAGAGGAAGTGGCTGTGAAGCTGGAATCTGCAAAGACCAAGCACCCTCAGCTTCACTACGAGTCAAAACTATACATGCTTCTTCAAGGAGGAACTGGTATCCCCCATCTCAAATGGTTTGGAGTTGAGGGCGATTACAATGTCATGGTTATTGATCTCCTTGGGCCAAGCCTGGAAGACTTGTTCAACTACTGCAATCGGAAACTGTCCTTGAAGTCGGTTTTGATGCTTGCAGATCAGTTGATAAACAGAGTTGAATATATGCATTCACGGGGTTTCCTTCATCGTGACATAAAGCCAGACAATTTTCTAATGGGCTTGGGTCGAAAGGCTAATCAGGTGTACATCATTGACTATGGTCTTGCGAAGAAGTATAGAGATCTTCAGACACACAAGCATATACCATACAGAGAAAATAAGAATCTTACGGGAACAGCTCGCTATGCAAGTGTCAATACTCATCTTGGAGTTGAGCAAAGCAGAAGGGACGATTTAGAATCACTGGGCTACGTGCTAATGTATTTTCTTAGGGGAAGCCTTCCTTGGCAGGGACTGAAGGCAGGGACTAAAAAGCAAAAATATGATAAGATCAGTGAAAAGAAGATGCTTACTCCAGTAGAGGTCCTCTGCAAGTCATATCCATCAGAATTTACATCCTACTTTCACTATTGTCGGTCGCTGAGGTTTGAAGATAAACCTGACTATTCATATCTGAAGAGATTATTCCGAGACCTTTTCATCCGTGAAGGATATCAATTTGACTATGTATTTGACTGGACTATACTCAAATATCCACAGATTGGCTCCAGTTCAAAACCACGACCCAGTGGAAAACCAGGTCACACCCCAGGGCCATCAGCTGAAAGAGGGGAAAAGCATCCAG 1624 43.1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQFPSNLQDSLLYPIVLILYFKKRPIPVRVWRTLPLPDILVWQDGAFPNPRLFAHQFSGVNLQNGKQIQVKDGERPSMNIDIHAIGNVYSELFITEALRFFCLISGLNGICDHCHHRPGRCGSQAAFHDLNPYRNRRRTWIENGIVMEHIIGGKFKLGRKIGSGSFGELYLGTNVQTGEEVAVKLESAKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNVMVIDLLGPSLEDLFNYCNRKLSLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMLTPVEVLCKSYPSEFTSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGSSSKPRPSGKPGHTPGPSAERGEKHP 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3780351 3791319 - CmPI595203_05g004530.1 Cmu05g0453 415367

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0453 541 Gene3D Transferase(Phosphotransferase) domain 1 193 531 - -
Cmu05g0453 541 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0453 541 ProSitePatterns Protein kinases ATP-binding region signature. 231 254 IPR017441 GO:0005524(InterPro)
Cmu05g0453 541 Pfam Protein kinase domain 226 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0453 541 Pfam Splicing factor 3B subunit 10 (SF3b10) 5 72 IPR009846 -
Cmu05g0453 541 ProSiteProfiles Protein kinase domain profile. 225 494 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0453 541 FunFam Putative Casein kinase I 217 301 - -
Cmu05g0453 541 FunFam Casein kinase 1-like protein 217 541 - -
Cmu05g0453 541 CDD STKc_CK1_delta_epsilon 224 498 - -
Cmu05g0453 541 PANTHER CASEIN KINASE-RELATED 224 518 IPR050235 GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006897(PANTHER)|GO:0007165(PANTHER)|GO:0018105(PANTHER)
Cmu05g0453 541 SMART serkin_6 225 503 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0453 541 MobiDBLite consensus disorder prediction 515 541 - -
Cmu05g0453 541 SUPERFAMILY Protein kinase-like (PK-like) 220 506 IPR011009 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0453 K08960 - - csv:101207063 667.922
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0453 Cmu-Chr5:3780351 Cmu07g0173 Cmu-Chr7:1695385 1.60E-173 dispersed
Cmu01g2343 Cmu-Chr1:35547933 Cmu05g0453 Cmu-Chr5:3780351 2.00E-35 transposed
Cmu02g2362 Cmu-Chr2:37126829 Cmu05g0453 Cmu-Chr5:3780351 8.40E-50 transposed
Cmu04g0574 Cmu-Chr4:19142426 Cmu05g0453 Cmu-Chr5:3780351 4.80E-51 transposed
Cmu08g1155 Cmu-Chr8:23938029 Cmu05g0453 Cmu-Chr5:3780351 5.20E-53 transposed
Cmu09g0013 Cmu-Chr9:427857 Cmu05g0453 Cmu-Chr5:3780351 7.10E-52 transposed
Cmu11g0166 Cmu-Chr11:2124998 Cmu05g0453 Cmu-Chr5:3780351 1.10E-152 transposed
Cmu05g0453 Cmu-Chr5:3780351 Cmu06g0698 Cmu-Chr6:8130668 8.80E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g723 . . . . . . . . . . . . Car06g01135 . . Cpe08g00337 Cpe03g01519 Bhi01g00722 . . . Hepe05g1661 . . . . . . . . . . . Cone7ag0328 Cone4ag0332 Lsi05g01737 . . Cme06g00484 . . . . . . . . . Cmo06g01327 . . . . . . . . . . . . . . Cla05g00440 Cam05g0478 Cec05g0488 Cco05g0488 . Cmu05g0453 Cre05g0515 . Csa03g01202 Chy06g00466 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000454 2 6 4 3 4 3 5 3 3 3 3 2 5 3 3 4 3 8 5 3 3 3 3 3 3 3 3 15 4 2 117
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75506 PF00069 Pkinase 3.90E-26 CL0016 Cmu PK