Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0464 ATGGATTACTCTGGATTCTTCTCCCCGGTTTCCGATTTCTCCTCCGAATCATCGTTCGGTTCACCAGAATCATCCTTCATGAATTTGGACCACAATTTTCTTCCTTTCAATGAGAATGACTCAGAGGAAATGCTTCTGTATGGCCTAATCTCCGAGGGGACACAGGATTCCTCCGACAACAGTATCGGAACCGCGCGAGTGAAGGAAGAGGAAGTCGATTCGATCGGTGAAGAAAGCCCAAAGAAGGAGAGGGCTTACAGGGGAGTTCGTCGCCGGCCATGGGGAAAATTTGCGGCGGAAATTAGAGATTCTACTAGACATGGCATAAGGGTATGGTTAGGAACTTTCGACAGTGCCGAAGCCGCCGCTTTGGCTTACGATCAAGCCGCCTTTTCAATGAGGGGTGCCGCCGCAATTCTCAATTTTCCCGTCGACAGAGTTAGGGAGTCTCTCAAAGAAATGAATTGCAGTGGCGGCGGCAGTGATAGTATAGCTGAAGACGGCGGCTCTCCGGTGGTGGCGTTGAAAAGAAAACACTCGATTAGAAGGAAAGCCATAAGCAAAAAGAGCAAAGAGAGAGATGTGAGGATCCAAAATGTGGTGGTTTTGGAAGATTTAGGAGCAGAGTATTTGGAAGAACTTTTGGGCACTTCTCAAAGTGGTAGCCCTTGTTCTTTCTAA 681 48.02 MDYSGFFSPVSDFSSESSFGSPESSFMNLDHNFLPFNENDSEEMLLYGLISEGTQDSSDNSIGTARVKEEEVDSIGEESPKKERAYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGAAAILNFPVDRVRESLKEMNCSGGGSDSIAEDGGSPVVALKRKHSIRRKAISKKSKERDVRIQNVVVLEDLGAEYLEELLGTSQSGSPCSF 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3881839 3882519 - CmPI595203_05g004640.1 Cmu05g0464 415378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0464 226 MobiDBLite consensus disorder prediction 63 84 - -
Cmu05g0464 226 PANTHER DNA-BINDING DOMAIN 56 185 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Cmu05g0464 226 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0464 226 SUPERFAMILY DNA-binding domain 85 144 IPR016177 GO:0003677(InterPro)
Cmu05g0464 226 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0464 226 Pfam AP2 domain 86 135 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0464 226 MobiDBLite consensus disorder prediction 8 23 - -
Cmu05g0464 226 MobiDBLite consensus disorder prediction 53 84 - -
Cmu05g0464 226 FunFam Ethylene-responsive transcription factor 2 84 145 - -
Cmu05g0464 226 CDD AP2 86 145 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0464 226 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0464 226 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu05g0464 226 MobiDBLite consensus disorder prediction 1 23 - -
Cmu05g0464 226 SMART rav1_2 85 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0464 Cmu-Chr5:3881839 Cmu06g0682 Cmu-Chr6:7808550 3.50E-66 dispersed
Cmu05g0464 Cmu-Chr5:3881839 Cmu05g0465 Cmu-Chr5:3913135 5.70E-16 tandem
Cmu05g0464 Cmu-Chr5:3881839 Cmu06g0162 Cmu-Chr6:1669394 2.20E-15 wgd
Cmu05g0464 Cmu-Chr5:3881839 Cmu06g0680 Cmu-Chr6:7769344 1.90E-19 wgd
Cmu05g0464 Cmu-Chr5:3881839 Cmu07g0155 Cmu-Chr7:1473892 1.20E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6107 PF00847 AP2 2.60E-14 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0464 K14516 - csv:101210326 355.14