Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0468 ATGAAGATCATGGTCGCCATTAAGCGAGTCGTCGATTACGCCGTCAAAATCCGTGTTAAACCGGACAGAACGGGCGTTGAGACCCAGAATGTCAAAATGTCGATGAACCCCTTTTGCGAGATTGCAATCGAGGAAGCCCTGCGTATCAAGGAGGCTGGCTTCGCCTCTGAGGTTGTGGCGGTCAGCATGGGTCCGGCTCAGTGCGTCGACACTCTCAGGACGGGCCTAGCGATGGGCGCTGACAGGGGCATTCATGTGGAAGCCACTGCACCCCTTTATCCTCTCTCTGTTGCTAAGCTTTTGAAGGCCCTTGTTGAGGTTGAGAAGCCTGGCCTTCTTTTACTAGGCAAACAGGCTATTGATGATGATTGTAACCAAACCGGGCAGATGATTGCAGGTCTTCTGAACTGGCCTCAAGGGACTTTTGCTTCAAAGGTTGTGATAGACAAGGAGAAGCAGGCAGTGACAGTGGACAGAGAAGTGGATGGTGGTCTTGAGACCCTCTGTTTGGACTTACCAGCCGTAATCACAACTGATTTGAGGCTGAATCAACCGAGGTATGCTACGCTCCCGAACATAATGAAAGCGAAATCAAAACCCATAAAGAAGTTCACTCCACAGGAATTAAATGTGGATGTGAAGCCAGATTTAGAGGTCGTTGAAGTTACGGAACCTCCAAAAAGAAAAGCGGGTATCATATTGTCATCTGTTGATGAACTGATTGACAAACTCAAAAATGAAGCTCATAGGGGTGCGGCGGTGGACGACGCTTTCATTCCAGATCAGATGGATCCCTTAGAGGATTCTAGTTGTTGGGATTTTCTTGATTGCTCCTTCTTCGTCGACGGTGGCAATCTTATTAACACTTCGCTCGATCCTTTGGATAGTTGTGCGGAGACTGATGTTTCAGCTGGGCGTGTTGAGTCTGAAGAAAACGAGTGTTCGCGGAAGAGGGCACGAGATGGGTCGTGCGCTGGACCAACTTCGAAAGCTTGTCGCGAGAGGTTGCGGAGGGAGAAATTAAATGATAGGTTTCTAGATTTGAGCATTGCTTTAGAACCTAGTAGACCTACCAAAACTAACAAGCCGGCCATACTTGATGATGCCATTAGAGTGTTAAATCAACTTAAGAATGAAGCCGAAGACCTCAAACAAACTAATGAAAAGTTACGAGAAGAAGTGGAGTGTTTAAAGGCAGAGAAGAATGATCTTCGGAAAGAGAAAATCATTCTGAAGGAAGACAAAAAACGAATCGAACAACAGTTGAAATCTGTAGTCGTTCCACCTCCAGGGCTTATCCCTGGTCATCCAGCTGCATATCATGCTGCTGCTCCAGGTAAGATGGCTGTTTTTCCTGGTTATGGTCTGATCCCAATGTGGCAATATCTTCCTCCATCAGTACGAGATACATCTCAAGATCATGAGCTCAGGCCCCCTGCTGCATAG 1446 47.23 MKIMVAIKRVVDYAVKIRVKPDRTGVETQNVKMSMNPFCEIAIEEALRIKEAGFASEVVAVSMGPAQCVDTLRTGLAMGADRGIHVEATAPLYPLSVAKLLKALVEVEKPGLLLLGKQAIDDDCNQTGQMIAGLLNWPQGTFASKVVIDKEKQAVTVDREVDGGLETLCLDLPAVITTDLRLNQPRYATLPNIMKAKSKPIKKFTPQELNVDVKPDLEVVEVTEPPKRKAGIILSSVDELIDKLKNEAHRGAAVDDAFIPDQMDPLEDSSCWDFLDCSFFVDGGNLINTSLDPLDSCAETDVSAGRVESEENECSRKRARDGSCAGPTSKACRERLRREKLNDRFLDLSIALEPSRPTKTNKPAILDDAIRVLNQLKNEAEDLKQTNEKLREEVECLKAEKNDLRKEKIILKEDKKRIEQQLKSVVVPPPGLIPGHPAAYHAAAPGKMAVFPGYGLIPMWQYLPPSVRDTSQDHELRPPAA 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3941868 3949178 + CmPI595203_05g004680.1 Cmu05g0468 415382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0468 481 Pfam Electron transfer flavoprotein domain 26 207 IPR014730 -
Cmu05g0468 481 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 396 IPR036638 GO:0046983(InterPro)
Cmu05g0468 481 Gene3D HUPs 1 249 IPR014729 -
Cmu05g0468 481 SMART finulus 331 382 IPR011598 GO:0046983(InterPro)
Cmu05g0468 481 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 1 244 - -
Cmu05g0468 481 CDD bHLH_AtILR3_like 330 405 - -
Cmu05g0468 481 ProSitePatterns Electron transfer flavoprotein beta-subunit signature. 157 177 IPR000049 GO:0009055(InterPro)
Cmu05g0468 481 Coils Coil 366 421 - -
Cmu05g0468 481 PANTHER ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT 1 249 IPR012255 GO:0005739(PANTHER)|GO:0009055(PANTHER)|GO:0009055(InterPro)|GO:0009063(PANTHER)|GO:0033539(PANTHER)
Cmu05g0468 481 Pfam Helix-loop-helix DNA-binding domain 329 377 IPR011598 GO:0046983(InterPro)
Cmu05g0468 481 SMART ETF_2 23 213 IPR014730 -
Cmu05g0468 481 CDD ETF_beta 2 205 IPR033948 -
Cmu05g0468 481 Gene3D - 328 405 IPR036638 GO:0046983(InterPro)
Cmu05g0468 481 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 376 IPR011598 GO:0046983(InterPro)
Cmu05g0468 481 FunFam Electron transfer flavoprotein subunit beta 1 250 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0468 Cmu-Chr5:3941868 Cmu10g1383 Cmu-Chr10:6867646 2.80E-28 dispersed
Cmu05g0468 Cmu-Chr5:3941868 Cmu05g1535 Cmu-Chr5:24033478 5.10E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6110 PF01012 ETF 1.70E-44 CL0039 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0468 K03521 - csv:101210570 474.937