Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0484 ATGATGGGTTGGGTGGGATTGTCCGGGGTTGATCATCATCACCCTGCTGCGATCAACAACTCTCCCATCTTCAAACAAAGCGATGAAAACAGCGGCGGCAGCAGAGACGACGACGACGACGACGACAACAACCGCGATGAGCCTAAAGAAGGCGCGGTGGAAGCCGGAACACGGAGGCCAAGAGGCCGTCCACCTGGATCTAAAAACAAACCCAAACCCCCAATCTTCGTCACACGTGACAGTCCCAACGCCCTTCGGAGCTACGTCCTAGAGGTAGCTGCCGGATCCGACGTGGCCGATTCCATCGCTCAATTCGCCCGTAAACGCCAGCGTGGCGTCTGCGTCCTCAGTGCAACCGGCTTAGTCGCTAACGTCACCTTACGTCAGCCCGCTGCTCCCGGTTCCGTAATGCCACTCCAAGGAAGGTTTGAGATTCTATCTTTAACCGGCGCTTTTTTACCCGGTCCGGCCCCACCTGGCTCTACTGGCCTCACCGTTTACTTGTCCGGCGGTCAGGGCCAGGTCGTCGGTGGGAGCGTCGTTGGCTCGCTTGTGGCTGCCGGACCCATTATGGTAATTGCAGCCACTTTTGCTAATGCCACTTATGAAAGGTTGCCTCTTGAAGATCCCGACGACCATGAAGTTGGAAGTGGCTCCGCCTCACACGGCGGTCCTAGAAGTCCACCGCCCGAAATTAGAGCCACTGGAGGAGCGCAGATGCCGCCTGGGATGCCGGAACCCACTTTGCCGTTGTATAATTTACTGCCGGATATGATTCCCAACGGTGTTCAGCTTGGTCACGACGGGTATGCTTATGTCCGGCCGCCGTATTGA 834 57.07 MMGWVGLSGVDHHHPAAINNSPIFKQSDENSGGSRDDDDDDDNNRDEPKEGAVEAGTRRPRGRPPGSKNKPKPPIFVTRDSPNALRSYVLEVAAGSDVADSIAQFARKRQRGVCVLSATGLVANVTLRQPAAPGSVMPLQGRFEILSLTGAFLPGPAPPGSTGLTVYLSGGQGQVVGGSVVGSLVAAGPIMVIAATFANATYERLPLEDPDDHEVGSGSASHGGPRSPPPEIRATGGAQMPPGMPEPTLPLYNLLPDMIPNGVQLGHDGYAYVRPPY 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4050405 4051981 + CmPI595203_05g004840.1 Cmu05g0484 415398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0484 277 CDD DUF296 86 168 IPR005175 -
Cmu05g0484 277 MobiDBLite consensus disorder prediction 208 249 - -
Cmu05g0484 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 198 IPR005175 -
Cmu05g0484 277 ProSiteProfiles PPC domain profile profile. 82 223 IPR005175 -
Cmu05g0484 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 270 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cmu05g0484 277 PIRSF ESCAROLA 6 275 IPR014476 GO:0003680(InterPro)
Cmu05g0484 277 FunFam AT-hook motif nuclear-localized protein 85 213 - -
Cmu05g0484 277 Gene3D - 85 214 - -
Cmu05g0484 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 210 - -
Cmu05g0484 277 MobiDBLite consensus disorder prediction 15 80 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2169 Cmu-Chr2:35320575 Cmu05g0484 Cmu-Chr5:4050405 7.80E-10 dispersed
Cmu05g0484 Cmu-Chr5:4050405 Cmu07g0391 Cmu-Chr7:3988582 3.70E-65 dispersed
Cmu02g1685 Cmu-Chr2:30704604 Cmu05g0484 Cmu-Chr5:4050405 1.50E-77 wgd
Cmu05g0484 Cmu-Chr5:4050405 Cmu06g0668 Cmu-Chr6:7626063 2.80E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0484 - - - 0.0