Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0487 ATGGAGAGGAACTGTTTACGGACCGTGTATCGTACGAGTTTAACAACAATGAACGCGACGATCGGTGGAGGAGCCAGCCCCGCCAACACCGCCGTGAAAAGCCAGAGGAACAAGCTGTGCCGGGCGGCGGAGGAGGATTTCATAAATGGGATTTCATGGCCTCCAAGAAGTTACACGTGCAACTTTTGCAAAAGGGAATTTAGATCAGCTCAAGCTCTTGGTGGTCATATGAATGTTCATAGGAGAGATAGAGCCTTGCTCTATTCTCCCCCAGCTGATGGTCAGTTCACAAATCTCAACCTTAACCTTCACCATAACCCTAACCCTAATATCCCATCTCACGACGACGTTGCATTTGTTGGTCGAAAAGCTTCGGATTTGAAATCGTCAACCACGATGGCGGCAGAGATTGCAAAACCTAATATGTTTGACAGAGCTCATTGGAAGGAGGGTGAGAAATTCAATATTGGGTTGGACATTGAAATCAGTACAACTAATAATACTACTTCTTCTACCAATGTACTTACTGACTCCAAGAAGGACATTGATTTGGAGCTTCGATTAGGGTACTCAACTTAG 579 45.42 MERNCLRTVYRTSLTTMNATIGGGASPANTAVKSQRNKLCRAAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGRKASDLKSSTTMAAEIAKPNMFDRAHWKEGEKFNIGLDIEISTTNNTTSSTNVLTDSKKDIDLELRLGYST 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4104544 4105122 - CmPI595203_05g004870.1 Cmu05g0487 415401

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0487 192 Gene3D Classic Zinc Finger 51 90 - -
Cmu05g0487 192 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Cmu05g0487 192 Pfam C2H2-type zinc finger 58 82 IPR013087 -
Cmu05g0487 192 PANTHER OS07G0101800 PROTEIN 41 191 IPR052426 -
Cmu05g0487 192 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Cmu05g0487 192 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Cmu05g0487 192 SMART c2h2final6 58 80 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0487 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0487 Cmu-Chr5:4104544 Cmu09g1159 Cmu-Chr9:12539452 9.80E-17 dispersed
Cmu05g0486 Cmu-Chr5:4096510 Cmu05g0487 Cmu-Chr5:4104544 9.10E-08 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g642 . . . . . Bpe14g01236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme06g00520 Blo02g00620 . . Bda13g00081 . . . . . . . . . . . . . . . . . . . . Cla05g00469 Cam05g0510 Cec05g0524 Cco05g0525 Clacu05g0511 Cmu05g0487 Cre05g0551 . Csa03g01241 Chy06g00494 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012411 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6114 PF13912 zf-C2H2_6 5.80E-07 CL0361 Cmu TF