Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0522 ATGGGGGAGCGGATGGAGGAAAAGGGAAGTGCTCAATCAAAGCGTATTTCTAGGGTTTCTCTTAACTTATTCACAAGGAGCGGTCCTCTTCCGGCCATTGTCGCCCGCTCCTTCTTCCCCCCTTTCTATGAGTTATCCCTTTCTTTAACTTCAATTGTTGCTCTTCTTACGTTTCGTTTCTATGCTCTTCTTAACTCTGAAGAAACGGTCGCCGACTCTTCGGAAAGCAGCCTTGTCGAGGCAAGAAATTTGAAATCTTCTGAGTTGGTTTCGTTTGAGGATGTCAATGGAAATGATGCTGATGATTCGGTTCTTGATGTATCGGGGAGAAACTTGGATTCTAATTTCTTGGACGGTTCCAGCAGCTCAGTGAAGGGTCTGTACATATTTCGGAATGCGTTCAATTTGATCCCGAAATCAGTTGGTGACTTTAGAGAATTGAGAATGCTTAAGTTCTTTGGAAACGAGATTAACTTGTTTCCACCAGAGTTGAAGAACTTTGTGGGGTTAGAATGCTTGCAGGTAAAGTTATCATCACCGGGGCTTGGTGGTTTATCATTACACAAACTGAAGGGTCTAAAGGAGCTCGAGCTATCGAAGATTCCTCCTAAACCTTCCTCGTTTCCAATTCTTAGCGAGATCGCTGGCCTTAAGTGCTTGACTAAGCTCTCTGTTTGTCACTTTTCTATTAGATTTCTTCCTCCTGAAATTGGCTGCCTGAATAGTTTGGAGTATCTGGATCTCTCATTTAATAAGTTGAAGAGCCTTCCAGCAGAAATAGGCTATTTGGATTCCTTGATATCCTTGAGAGTTGCCAATAACAAATTGGTGGAACTGCCTCCAGCTTTGTCCTCCCTGCAGAAGTTGGAGAACTTGGATCTGTCAAGTAATAGGTTAACATCATTGGGGTCTCTTGAACTTGTATCTATGCATAGCCTTAGAAATTTGAATTTACAGTACAATAAGCTTCTGAAAAGCTGTCAGATACCCTCCTGGATATGCTGTTATTTTGAAGGAAATTGTGGAGATGATACAGCCAATGAAGAATGGATTAGTTCTACAGTTGAAATGGATGTTTATGAAGCCATCATTCAGGGCAATGAGAATAGTTTTCCTCATAAAGGTACTCGTAACCTCTCATCAAACCTATTAATGGGACCTTCAACAAATAGTAGATCTTTTGCATCTAGAAAATCAGGTAAGCGATGGCGAAGACGACATTATTTACAGCAGAAAGCTCGCCAGGAACGTTTGAACAGCAGCAGGAAGTGGAAAGGAGTAGATCATCATACTGAAGTGAAGATCCATGAAAATCATGAACCAGGGAAGCTTGATTCTGCCCCTATTTCTGAAACTACAGTTGAAGATTCATCAGTTATTGATGAATCATTTGATAGTAAAGAAACATGTGATGTGGGAGCTGAAAGGGAAGATCATATCAAGAGCCATGAAAATGACAATTTTGATCCCAAAAAGGAAATTTCTGTGGAGGATTGCTCAAGTATCTGTGATGCTGCTGCAGAAACAATGACAAGGGATGAAAATGAATGTTGTGAGCCTAGTGAGGTTTTGCCGCTAACAGGAAATGGAGCACATGACCAAGAAGGGTCATCTTCACAAATATCAAAGGATAATTCTAAGTTGAAAAGATATTCTGAGAGGGAACTTGATAATCCTAAACCTTGCAAGTCAAGAAAGCCAGTTGAAGATAGCTCAACTTTATCTTGCAAGTACAATAGTACCTCATTTTGCAACGTTGAGGATTATTTGCCCGACGGATTTTATGATGCAGGGCGTGATCGCCCCTTCATGCCATTAAGGAATTATGAACAAAATTTCCATCTTGATTCACGTGAAGTCATTATTGTTAACAGGGAACATGATGAAGTATTAGATTCTATAGCAATATCTGCCAAGTCATTGGTACTCCGTCTAAAGCAGATTAACCACCTAACCCAAGAAAGACATCAAATTCTTGATGATGTATATATTGCACAATTACTTGCTTTATTTGTATCTGATCATTTCGGAGGCAGTGATAGAAGTGCAATGGTTGAGAAAACACGGAGAGCTGTTTCTGGTTCAAAGTATCAAAAGCCTTTTGTCTGCACCTGTTCAACTGGAGATCGAGATAATCTTACTATGTCTACCAAATTGACGGTGGATAGTTATGAGGATATTCTTTTTACTGATATCTGTGAGAAGTCTCTTCGTGCTATTAAAGCTAGTCGAAATTCTATCATAGTTCCTCTAGGAGCTCTGCAGTTTGGTGTGTGCAGACATAGAGCTTTGCTTCTCAAGTATTTGTGTGATCGCATGGAGCCTCCAGTACCTTGTGAGCTTGTGAGAGGTTACTTGGATTTCTTGCCTCATGCCTGGAATGTGATCTTAGTGAAAAGAGGTAATACTTTGGTTCGAATGGTTGTTGATGCATGTCGACCAAATGATATTCGAGAAGAAGCAGATCCTGAGTATTTTTGCAGGTATATTCCTCTCAGTCGTGCCAAACTTCCTATTTCTTTTGGAATGGCGTCCAGTCCAGGGATTTCCTTTCCGTCCCTTTCCAATTGTGATGAGATTGAAAAGGCACCTTCTAGTTCTGTAATAAAGTGCAAACTTGGGTCAGTTGAGTCTGCAGCAAAGTTACGGACGCATGAAGTTTGTGAATCTTCATTTGAAGAGATAAGAAACTTTGAATTCAGTTGCTTAGGCGAAGTTAGAATTCTGGGTGCTTTGAAACACTCATGCATAGTACAGATGTATGGACATCAGATATCCTCTGAGTGGATTCCTTCTGAAAATGGAAAACCAAAGCGTCGCTTACTTAAGTCTGCAATTTTCTTAGAGCATGTTAAAGGGGGATCTTTGAAGGGCTACATGGACAAGTTGTACGAAGCTGGGGAAAAACATATTCCAATGGATCTGGCATTGCATGTAGCTCGAGATGTCGCAAGTGCTTTGGTAGAGCTGCATTCAAAACACATCATTCATCGAGACATCAAAAGTGAAAATATTTTGATAGATTTTGATGAAAAATCTGATGGTGTTCCCATCGTTAAGCTTTGTGATTTTGATAGAGCAGTGCCCCTTCGATCTTTATTGCACACTTGTTGCATTGCTCATACTGGAATACCTCCTCCTGATGTTTGTGTTGGAACACCTCGATGGATGGCTCCAGAAGTTCTACGAGCAATGCATACACCAAGCATTTATGGACTGGAAGTGGATATTTGGTCGTTTGGATGTCTGTTATTGGAACTGTTGACCTTGCAAATTCCGTTCTTGGGGCTTACAGAATTGCAAATCTTCGATCATCTTCAGATGGGTAAACGACCCGAATTGTCAGGTGAGCTTGAGGAGGCATTGGGATCGATAAAGGAAAGCTCAATGTCTCAATCATCTGTTCAAGAATCAGATGGTTCAGAGGAAGACCAAGAAACTAAAGCCTTCTTGATTGACTTGTTTCGTAAGTGTACTCAGGAAAACCCGAACGACAGACCAACAGCTGAAGAACTCCACAGAATTTTGCTCGAGCATACAGTCAAAGTTAAATCTTTACAAGAACTAGCTACATGA 3576 40.77 MGERMEEKGSAQSKRISRVSLNLFTRSGPLPAIVARSFFPPFYELSLSLTSIVALLTFRFYALLNSEETVADSSESSLVEARNLKSSELVSFEDVNGNDADDSVLDVSGRNLDSNFLDGSSSSVKGLYIFRNAFNLIPKSVGDFRELRMLKFFGNEINLFPPELKNFVGLECLQVKLSSPGLGGLSLHKLKGLKELELSKIPPKPSSFPILSEIAGLKCLTKLSVCHFSIRFLPPEIGCLNSLEYLDLSFNKLKSLPAEIGYLDSLISLRVANNKLVELPPALSSLQKLENLDLSSNRLTSLGSLELVSMHSLRNLNLQYNKLLKSCQIPSWICCYFEGNCGDDTANEEWISSTVEMDVYEAIIQGNENSFPHKGTRNLSSNLLMGPSTNSRSFASRKSGKRWRRRHYLQQKARQERLNSSRKWKGVDHHTEVKIHENHEPGKLDSAPISETTVEDSSVIDESFDSKETCDVGAEREDHIKSHENDNFDPKKEISVEDCSSICDAAAETMTRDENECCEPSEVLPLTGNGAHDQEGSSSQISKDNSKLKRYSERELDNPKPCKSRKPVEDSSTLSCKYNSTSFCNVEDYLPDGFYDAGRDRPFMPLRNYEQNFHLDSREVIIVNREHDEVLDSIAISAKSLVLRLKQINHLTQERHQILDDVYIAQLLALFVSDHFGGSDRSAMVEKTRRAVSGSKYQKPFVCTCSTGDRDNLTMSTKLTVDSYEDILFTDICEKSLRAIKASRNSIIVPLGALQFGVCRHRALLLKYLCDRMEPPVPCELVRGYLDFLPHAWNVILVKRGNTLVRMVVDACRPNDIREEADPEYFCRYIPLSRAKLPISFGMASSPGISFPSLSNCDEIEKAPSSSVIKCKLGSVESAAKLRTHEVCESSFEEIRNFEFSCLGEVRILGALKHSCIVQMYGHQISSEWIPSENGKPKRRLLKSAIFLEHVKGGSLKGYMDKLYEAGEKHIPMDLALHVARDVASALVELHSKHIIHRDIKSENILIDFDEKSDGVPIVKLCDFDRAVPLRSLLHTCCIAHTGIPPPDVCVGTPRWMAPEVLRAMHTPSIYGLEVDIWSFGCLLLELLTLQIPFLGLTELQIFDHLQMGKRPELSGELEEALGSIKESSMSQSSVQESDGSEEDQETKAFLIDLFRKCTQENPNDRPTAEELHRILLEHTVKVKSLQELAT 1191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4461844 4470475 - CmPI595203_05g005220.1 Cmu05g0522 415436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0522 1191 ProSitePatterns Serine/Threonine protein kinases active-site signature. 995 1007 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 397 411 - -
Cmu05g0522 1191 SMART LRR_sd22_2 286 307 - -
Cmu05g0522 1191 SMART LRR_sd22_2 240 265 - -
Cmu05g0522 1191 SMART LRR_bac_2 263 282 - -
Cmu05g0522 1191 SMART LRR_bac_2 286 305 - -
Cmu05g0522 1191 SMART LRR_bac_2 240 259 - -
Cmu05g0522 1191 Pfam Protein kinase domain 900 1172 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0522 1191 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 269 1178 - GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Cmu05g0522 1191 FunFam Leucine-rich repeat protein kinase family protein 900 1182 - -
Cmu05g0522 1191 SMART LRR_typ_2 240 261 IPR003591 -
Cmu05g0522 1191 SMART LRR_typ_2 263 285 IPR003591 -
Cmu05g0522 1191 SMART LRR_typ_2 286 309 IPR003591 -
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 381 466 - -
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 546 567 - -
Cmu05g0522 1191 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515(InterPro)
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 381 396 - -
Cmu05g0522 1191 ProSiteProfiles Leucine-rich repeat profile. 288 309 IPR001611 GO:0005515(InterPro)
Cmu05g0522 1191 Gene3D Transferase(Phosphotransferase) domain 1 852 1190 - -
Cmu05g0522 1191 ProSiteProfiles Leucine-rich repeat profile. 242 263 IPR001611 GO:0005515(InterPro)
Cmu05g0522 1191 SUPERFAMILY Protein kinase-like (PK-like) 849 1176 IPR011009 -
Cmu05g0522 1191 SMART serkin_6 854 1181 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 1121 1144 - -
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 514 573 - -
Cmu05g0522 1191 FunFam At1g04210 178 363 - -
Cmu05g0522 1191 SUPERFAMILY RNI-like 112 329 - -
Cmu05g0522 1191 Gene3D Ribonuclease Inhibitor 76 349 IPR032675 -
Cmu05g0522 1191 ProSiteProfiles Protein kinase domain profile. 854 1176 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0522 1191 PRINTS Leucine-rich repeat signature 243 256 - -
Cmu05g0522 1191 PRINTS Leucine-rich repeat signature 286 299 - -
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 531 545 - -
Cmu05g0522 1191 MobiDBLite consensus disorder prediction 412 444 - -
Cmu05g0522 1191 Pfam Ethylene-responsive protein kinase Le-CTR1 733 810 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0522 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0522 Cmu-Chr5:4461844 Cmu05g1580 Cmu-Chr5:25295748 2.60E-19 dispersed
Cmu05g0522 Cmu-Chr5:4461844 Cmu01g1266 Cmu-Chr1:25247538 6.50E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g565 Blo01g00110 Blo12g00343 Bda03g00864 Bda08g00257 Bpe04g00813 . Bma04g00760 Bma05g01090 . . Cma06g01365 Cma14g01752 Car06g01180 Car14g01579 Sed12g0977 Cpe08g00290 . Bhi01g00754 Tan10g0783 Cmetu06g1325 . Hepe05g1592 . Lcy11g1588 . . . . . . . . . Cone7ag0282 Cone4ag0275 Lsi05g01644 . . Cme06g00569 . . . . Bpe05g00880 . . . . Cmo06g01376 . . . . . . . . . . . . . . Cla05g00503 Cam05g0554 Cec05g0566 Cco05g0564 Clacu05g0550 Cmu05g0522 Cre05g0591 . Csa03g01285 Chy06g00539 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008400 2 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 1 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75511 PF00069 Pkinase 1.80E-36 CL0016 Cmu PK