Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0534 ATGAAAACTTTAAGCTCCCCTCTCTCAAAATCTCTCTTCCTCATCTCCGTCCTCATCCTCCTCTCCCAACCTTCCCATCAAGCAACTCCGTCACCGACGCCATTTCTCCCAAACCCCAGACTTCTTAAGGCCTACTCCGCTCTCCAAGCTTGGAAACATGCCATCACCGCCGACCCGACCAACTTCACCTCCGATTGGTACGGCCCCAATGTCTGCAACTACTCCGGTGTCTTCTGCGCCCCCGCCCCCGACGACCCCTACATCCTCACCGTCGCCGGGATCGACCTCAACCACGCCAACCTCTCGGGCACCCTGCCCGACGACCTCGGCCTCCTCACCGACCTTGCTCTGTTCCACATCAACTCCAATCGCTTCTGCGGCACTATCCCCAATTCCTTCCGGTGCCTCACTCTTCTCTTCGAGCTCGATATCAGCAACAATGACTTCTCCGGCGAATTCCCCTCTGTAATTCTCTCTCTCCCAGCACTCAAATTCCTCGATATTCGATTCAACAAATTCCATGGCGATCTCCCTTCTCCCCTGTTTGACTTGAAACTCGATGCTCTGTTCATCAACAACAACGATTTCAAATTTTCCCTACCGGAAAATATCGGCAATTCCCCTGTTTCTGTTCTGGTTTTTGCTAATAACAACATCAATGGCTGTCTCCCCTCTAGTTTATCCAATATGAACAACACACTCAATGAAATTATAATCACGAATAGTGGGTTGATTGGGTGTTTACCGCCGGAAATTGGGTCTTTGAGCAATCTGACCGTCTTCGATGTTAGTGACAACAATCTCGTCGGACCGTTGCCGGAGACAATGGCTGGAATGAAGAAATTGGAGCAGCTAAATGTGGCACATAACCAATTATCCGGCGAGATTCCAGCGAGTATTTGTTCGTTGCCGAAATTGCAGAATTTCACTTACTCGTATAATTTCTTCTGCAGTGAGCCGCCGGTGTGCCTGAAACTTCAGGCCAGTGATGACCAGAAAAATTGTTTGCCGGAAAGGCCACTGCAACGTTCGCCGGAGGAATGCAAAGCTTTCTACTCTTACCCTGTTGATTGCGGCGTCTTTGGGTGTACTCGTCGGCCGCCACCACCGCCGCCATCTTATTGGTGA 1128 50.62 MKTLSSPLSKSLFLISVLILLSQPSHQATPSPTPFLPNPRLLKAYSALQAWKHAITADPTNFTSDWYGPNVCNYSGVFCAPAPDDPYILTVAGIDLNHANLSGTLPDDLGLLTDLALFHINSNRFCGTIPNSFRCLTLLFELDISNNDFSGEFPSVILSLPALKFLDIRFNKFHGDLPSPLFDLKLDALFINNNDFKFSLPENIGNSPVSVLVFANNNINGCLPSSLSNMNNTLNEIIITNSGLIGCLPPEIGSLSNLTVFDVSDNNLVGPLPETMAGMKKLEQLNVAHNQLSGEIPASICSLPKLQNFTYSYNFFCSEPPVCLKLQASDDQKNCLPERPLQRSPEECKAFYSYPVDCGVFGCTRRPPPPPPSYW 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4587282 4588409 + CmPI595203_05g005340.1 Cmu05g0534 415448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0534 375 Gene3D Ribonuclease Inhibitor 43 206 IPR032675 -
Cmu05g0534 375 Pfam Leucine Rich Repeat 139 159 IPR001611 GO:0005515(InterPro)
Cmu05g0534 375 Gene3D Ribonuclease Inhibitor 207 334 IPR032675 -
Cmu05g0534 375 FunFam Leucine-rich repeat extensin-like protein 1 45 206 - -
Cmu05g0534 375 Pfam Leucine rich repeat N-terminal domain 46 79 IPR013210 -
Cmu05g0534 375 SUPERFAMILY L domain-like 44 325 - -
Cmu05g0534 375 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 230 319 - -
Cmu05g0534 375 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 27 369 IPR051582 -
Cmu05g0534 375 Pfam Leucine rich repeat 233 292 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2194 Cmu-Chr3:30445825 Cmu05g0534 Cmu-Chr5:4587282 2.30E-26 dispersed
Cmu05g0534 Cmu-Chr5:4587282 Cmu07g0291 Cmu-Chr7:2924466 3.20E-48 dispersed
Cmu05g0534 Cmu-Chr5:4587282 Cmu11g0242 Cmu-Chr11:2917300 1.60E-39 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0534 - - - 0.0