Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0538 ATGAATTCGGTAAAAAAGAAGGAGGAATCTTGGCTCATCCATCCGTTGGATACGTGCGTACAGTCAACATTTACGGTCTTCTTCTTTCTGGCGAGGGCTCCTTTTAGGGTCTGCGGGTCCGATTATGCTGAGAGGTCTAGAATTCCTTGTATTCGAGGTGTACTATTTGAGTTATCTGTGTTGATCTTAGCAATGAATTCGAAAGGCAATGATATGGGGGGTTCTCCGGTCCCAAAGGAGACACAGAGCCAGGATAGAACTCTGAACTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGATATGATATTCAGAGCAGATATGATTGATTTGAAAACTCTAGATATGCAGCTAGAGAAGCACTTGAGCCGTGTCTGGTCAAAGAGCATTGAGAATCAAAGGCCTAAGGATGTGTGGGAGATTGATTTGTCTAAACTTGAGATCATAAGGCTGGTTGCTCAAGGGACTTATGGAACAGTATACCGGGGTACATATGACAATCAAGATGTTGCAGTGAAGGTATTGGACTGGGGGGAGGAGGGTCTAGCCACAACGGCTGAAACTGCTGCTTTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGATCATCCTAATGTTACAAAATTTGTCGGAGCTTCAATGGGAGCAACAAATCTTAAAATTCCAATGGATGAACAAAATTCGTTTCCATCTAGGGCCTGTTGCGTTGTTGTTGAGTTTGTTCCTGGTGGGACATTAAAACAATACTTGATTAGATTCTGTAGAAGGAAACTTAGCTTTAGGGAAGTGATTAAATTAGCTTTGGAACTCTCTAGAGGGCTTAGCTATCTACACTCCAAGAAGATTGTGCATCGTGATGTCAAAACTGAAAATATGTTGATGACAAGCGACTACGCTGTCAAAATTGCTGATTTTGGGGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGATATGACTGGGGAAACTGGTACTCTTGGATACATGGCCCCAGAGGTTCTTCAAGGGAAGCCATACAATAGAAGATGTGATGTCTATAGCTTTGGCATCTGCTTGTGGGAAATTTACTGCTGTGATATGCCATACGCCGATCTTAGTTTTGCTGACGTGTCATCTGCAGTTGTTCGACAGAATCTGCGACCCAGTATCCCGAGATGCTGTCCAAGTTCTCTGGCAAATGTGATGAAGAAATGCTGGGATGCGAATCCAGCCAAACGCCCTGAAATGCATGAGGTTGTCAAAATGTTGGAAGCCATTGATACAAGCAGAGGAGGGGGGATGATTTCTCCTGATGACACTAGCTGTTTATGTTTCAGGCCTTTCGGCAAGAAATTTGCCCCCATATTGTCACTACTGCAGTTACCAATCTGTCTTTGTTTCAGCATTTTTCAATGA 1407 43.92 MNSVKKKEESWLIHPLDTCVQSTFTVFFFLARAPFRVCGSDYAERSRIPCIRGVLFELSVLILAMNSKGNDMGGSPVPKETQSQDRTLNSKVAGMGSISSKDMIFRADMIDLKTLDMQLEKHLSRVWSKSIENQRPKDVWEIDLSKLEIIRLVAQGTYGTVYRGTYDNQDVAVKVLDWGEEGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPMDEQNSFPSRACCVVVEFVPGGTLKQYLIRFCRRKLSFREVIKLALELSRGLSYLHSKKIVHRDVKTENMLMTSDYAVKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLQGKPYNRRCDVYSFGICLWEIYCCDMPYADLSFADVSSAVVRQNLRPSIPRCCPSSLANVMKKCWDANPAKRPEMHEVVKMLEAIDTSRGGGMISPDDTSCLCFRPFGKKFAPILSLLQLPICLCFSIFQ 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4632522 4637464 + CmPI595203_05g005380.1 Cmu05g0538 415452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0538 468 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 90 421 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cmu05g0538 468 SUPERFAMILY Protein kinase-like (PK-like) 127 420 IPR011009 -
Cmu05g0538 468 CDD STKc_MAP3K-like 153 420 - -
Cmu05g0538 468 Pfam Protein tyrosine and serine/threonine kinase 148 420 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0538 468 FunFam Kinase suppressor of Ras 1 136 230 - -
Cmu05g0538 468 Gene3D Transferase(Phosphotransferase) domain 1 246 431 - -
Cmu05g0538 468 ProSiteProfiles Protein kinase domain profile. 147 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0538 468 PRINTS Tyrosine kinase catalytic domain signature 281 299 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0538 468 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0538 468 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0538 468 PRINTS Tyrosine kinase catalytic domain signature 243 256 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0538 468 SMART serkin_6 147 423 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0538 468 Gene3D Phosphorylase Kinase; domain 1 137 230 - -
Cmu05g0538 468 ProSitePatterns Serine/Threonine protein kinases active-site signature. 287 299 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0538 Cmu-Chr5:4632522 Cmu10g2185 Cmu-Chr10:27918846 3.20E-138 dispersed
Cmu05g0538 Cmu-Chr5:4632522 Cmu09g0694 Cmu-Chr9:6423778 1.10E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75512 PF07714 PK_Tyr_Ser-Thr 1.50E-60 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0538 - - - 0.0