Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0567 ATGCAGATTATGGCTGAACCAATATACACTGTAGCTTCTGATAGTGAAACTACTGGGGAAGAAAAAACAACATCAACTTTTCCGGAAATTGCAGTTGGAATTGATATTGGTACTTCACAATGTAGTATTGCAGTTTGGAATGGATCTCAGGTAGAGCTTCTTAAGAACACTAGAAATCAGAAAATTATGAGATCATATGTCACCTTCAAGGATGAGACTCCTTCTGGAGGAGTTAGTAATGAGTTAAGCCATGAGTATGACATGCTCTCTGGTGCTGCAATTTTCAATATGAAACGCTTGATTGGAAGAGTTGACACTGACCCAGTTGTTCATGCAAGCAAGAGCCTTCCTTTTCTAGTGCAAACTTTGGACATTGGTGTTCGCCCATTTGTTGCAGCTTTGGTAAATAATGTATGGAGATCTACCACTCCTGAAGAAGTTCTGGCAATCTTTATCGTCGAACTGAAAGTGATGGCTGAATATCAACTGAAGCGGCCAATTAGAAATGTTGTTTTGACAATTCCAGTTTCATTCAGCCGATTTCAGCTTACTCGGGTTGAACGAGCTTGTGCAATGGCTGGACTTCAAGTTAGATTGATGCCTGAACCAACAGCAGTAGCTTTATTATATGCTCAACAACAGCAGCAGGCTGTACATGAGGGCATGGGCAGTGGAAGTGAAAAAATTGCCCTTATTTTCAACATGGGAGCTGGGTATTGTGATGTTGCTGTGTCGGCGGTAGGAGGAGGAGTGTCACAGATCAGAGCCCTGGCTGGAAGTCCGATAGGAGGTGAAGATCTACTTCAAAACACCATGAAGTATCTTTTGCCAAATTCTGAATCTATATTCTCACACCGTGGAATTGATGAGATCAGAAGGATGGGCTTGCTCCGAGTTGCGACTCAAGATGCTATCCACAAGCTTTCATACCAGTCTAGTGTTCAAATCGATGTCAACTTGGGAAATGGGTCAAAGTTACGCAAGGTTCTAAGCCGAGAGGAGTTTGAGATGGTGAATAGCAAGGTGTTTGAGAAATGCGAGAACCTCATAAAGCAATGCTTGCATGATGCAAGGGTAGGGACCGAAGATTTGAGCGATGTAGTAGTAGTTGGTGGATGTTCATACATACCAAAGATCAGAAATCTTCTGATGGAAATAAGTAAAAAGAAGGCACTTTATGAAGGAATAGATCCTTTAGAAGCTGCTGTTTCTGGTGCAGCTTTAGAAGGTGCAATAGCATCAGGTATTGGCGATCCATTTGGCAGTTTAGATCTTCTTAGCATCCAAGTGACGCCTCTCGCCATTGGAATTCGAGCTGATGGTAACAGCTTTATTCCAATTATCCCCAAGAACACCACAATGCCAGCACGCAAGGAGTTGGTTTTCACAACTGTTCAAGACAATCAAAGTGAAGCCCTGATTGTTGTCTATGAAGGTGAAGAGACAAGAGCAGAGGAAAACCATCTACTTGGCTATTTCAAGATCATTGGAATTCCACCTGCACCCAAAGGAATCCCTGAAATCACTATTTGTATGGACATTGACTCTTCAAATATGCTTAGAGTTCTAGCTTGGGCAACACTCCCAGGTGGTCAACACCCTGCAACTCCCTACATGGAAGTCAAGATGCCAACCGTTGACGACGGACATGGCTGGTGTGCAGAAGCCCTGCATGGAAAATATGGTGCCGCCATGGAATTGGTTACATTGCGGAAGAAAGGCTAG 1725 43.25 MQIMAEPIYTVASDSETTGEEKTTSTFPEIAVGIDIGTSQCSIAVWNGSQVELLKNTRNQKIMRSYVTFKDETPSGGVSNELSHEYDMLSGAAIFNMKRLIGRVDTDPVVHASKSLPFLVQTLDIGVRPFVAALVNNVWRSTTPEEVLAIFIVELKVMAEYQLKRPIRNVVLTIPVSFSRFQLTRVERACAMAGLQVRLMPEPTAVALLYAQQQQQAVHEGMGSGSEKIALIFNMGAGYCDVAVSAVGGGVSQIRALAGSPIGGEDLLQNTMKYLLPNSESIFSHRGIDEIRRMGLLRVATQDAIHKLSYQSSVQIDVNLGNGSKLRKVLSREEFEMVNSKVFEKCENLIKQCLHDARVGTEDLSDVVVVGGCSYIPKIRNLLMEISKKKALYEGIDPLEAAVSGAALEGAIASGIGDPFGSLDLLSIQVTPLAIGIRADGNSFIPIIPKNTTMPARKELVFTTVQDNQSEALIVVYEGEETRAEENHLLGYFKIIGIPPAPKGIPEITICMDIDSSNMLRVLAWATLPGGQHPATPYMEVKMPTVDDGHGWCAEALHGKYGAAMELVTLRKKG 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4816819 4818543 - CmPI595203_05g005670.1 Cmu05g0567 415481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0567 574 Gene3D Actin; Chain A, domain 4 264 345 - -
Cmu05g0567 574 Gene3D - 32 411 - -
Cmu05g0567 574 FunFam Heat shock 70 kDa protein 8 95 150 - -
Cmu05g0567 574 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 426 527 IPR029047 -
Cmu05g0567 574 FunFam Heat shock 70 kDa protein 8 264 345 - -
Cmu05g0567 574 Gene3D - 95 150 - -
Cmu05g0567 574 FunFam Heat shock 70 kDa protein 8 419 534 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 238 248 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 30 43 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 505 521 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 170 190 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 364 380 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 58 70 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 396 416 - -
Cmu05g0567 574 PRINTS 70kDa heat shock protein signature 424 443 - -
Cmu05g0567 574 CDD HSP70_NBD 32 411 - -
Cmu05g0567 574 SUPERFAMILY Actin-like ATPase domain 30 212 IPR043129 -
Cmu05g0567 574 Gene3D - 215 393 - -
Cmu05g0567 574 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 422 534 IPR029047 -
Cmu05g0567 574 SUPERFAMILY Actin-like ATPase domain 226 412 IPR043129 -
Cmu05g0567 574 PANTHER HEAT SHOCK PROTEIN 70KDA 31 524 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Cmu05g0567 574 Pfam Hsp70 protein 31 526 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0567 K09489 - - csv:101206971 1048.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0567 Cmu-Chr5:4816819 Cmu09g1908 Cmu-Chr9:35153369 5.10E-77 dispersed
Cmu05g0567 Cmu-Chr5:4816819 Cmu09g1914 Cmu-Chr9:35190628 2.50E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g487 . . . . . . . . . . . Cma14g01701 . Car14g01537 Sed12g0915 . Cpe03g01430 Bhi01g00820 Tan10g0851 Cmetu06g1845 . Hepe05g1544 . Lcy11g1539 . . . . . . . . . . . Lsi05g01597 Csa02g01145 . Cme06g00615 . Blo07g00214 Bda11g00572 . . Bpe13g00611 . Bma06g01551 . . Cmo14g01744 . . . . . . . . . . . . . Cla05g00551 Cam05g0599 Cec05g0610 Cco05g0607 Clacu05g0597 Cmu05g0567 Cre05g0635 . Csa03g01338 Chy06g00585 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010241 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32