Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0597 ATGGCTCATATTGCTGTGGAAAGAAATAGGAGAAGGCAAATGAATGAACATCTTAGGGGAGATCAAGCCTCGATTATTGGGGGAGTCATAGAGTTTATCAAGGAGTTGCATCAAGTTTTACAATCGTTGGAGTCCAACAAACGGAGGAGGAAGAGTATAAGCCCTAGCCCTGGTCCGAGCCCGAGGCCGCAATCAATGGCGGGATCCAATAATGGCTCGCTTGGATTTGAAAATGGAGTTGATGTCGTCGGAGCGTGTTGCAATTCATCGGTCGCAGATGTCGAAGCGAAGATTTCGGGTTCAAACGTGGTTTTGAAGATCATTTCCCGCCGGATTCCTGGTCAACTTTCGAAGATGATTGGTGTCTTCGAGAGGCTCTCCTTTGAGGTTCTTCATCTCAACATTAGTAGTATGGATGACACAGTTCTGTACTCTTTTGTTGTCAAGATAGGGCTTGAATGTCAACTAAGTTTGGAGGAACTAGCTTATGAAGTTCAACAAAGCTTCTGCTCTCAAGTGTATTTATGCCAATGA 534 44.76 MAHIAVERNRRRQMNEHLRGDQASIIGGVIEFIKELHQVLQSLESNKRRRKSISPSPGPSPRPQSMAGSNNGSLGFENGVDVVGACCNSSVADVEAKISGSNVVLKIISRRIPGQLSKMIGVFERLSFEVLHLNISSMDDTVLYSFVVKIGLECQLSLEELAYEVQQSFCSQVYLCQ 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5059936 5061589 + CmPI595203_05g005970.1 Cmu05g0597 415511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0597 177 MobiDBLite consensus disorder prediction 44 71 - -
Cmu05g0597 177 PANTHER TRANSCRIPTION FACTOR FAMA 1 169 IPR044283 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010052(InterPro)|GO:0010374(PANTHER)|GO:0045893(PANTHER)
Cmu05g0597 177 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 50 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0597 Cmu-Chr5:5059936 Cmu05g0979 Cmu-Chr5:8952869 3.30E-27 dispersed
Cmu05g0597 Cmu-Chr5:5059936 Cmu08g1073 Cmu-Chr8:23002440 7.20E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0597 - - - 0.0