Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0598 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTATCTTCAAAACCCACCCCCGCCTCCTCCTCCTCCCTACCTTTCTTCTTCCTCTTTCTATTACCCCTCTGAACCTCAATCTCTTTCTCCTACTCCACCTCCGCCGCTGCAGACCCATCAGTTCACCAATTCCCACCCTCCTCCCCCGCACAGCCACCCTTACGGTCCAACTTCTCAGCCGCCACCTCTGCCGCCGATTCCTCATCCCCCTGCCCCTGCCCCCGCTCCTCACCCTTATTACTTCTCCGGTGGGTACAATTCGTGTAATTATGGAAATTCTTCGATGGGGCGTTTCAATTTTCACCCTTATTATGCTAATCAGAGTAATGGGTGGTCCCAAATTCGGCCGGCCATGGGTCCGCCGTTGCTTCCGCCACCGTCCTTGCCGTTTGTGGAGCATCGGCAAGCAAAGAAGGTTAGAAATGATGTGAATGTACATAAGGATACTTTAAGGATTGAGGTGGACGAGCAGAACCCTGATCATCATTTGGTTTCTTTCGTTTTCGATGCGTTGTATGATGGAAGCGTAACCATTCTATTTTTTGCCAAGGAGGAACCCAACTGTAGGTTCGTTCCAGTATATCCTGATGCCTTTAAGCCAGTCAAAATCCCATTTCAGAAGGGTCCTGCTCAGAAATTCTTTCAGCCTGTGGGAACTGGCTTTGACTTAGGGTTTTTCGAGTTGGAGGACCTCTCAAAACCATCACCTGGAGAAGACATTTTCCCTCTTGTTATATCAGCTGAGACTTGTTCACCCTCTCAATCTGATGAAGAACAAATTGGTGAGCCTCAGCGAGATAATTCACACATGCAAATCACTCAAGCTGTTTTGGAGAAGAAAAATGGTGGTCTTTTCCAGGTTAGAGTGATTAGGCAACTACTATGGATTGATGGAGTGAGATATGAGTTGCGTGAAATATTTGGAATAGGGAGTTCATCAGCAGAAGGTTTTGACGATAATGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCTGTATTACCATGCCGACATTTGTGCATGTGCAGTGATTGTGCCAAGGAACTGAGGCTTCAATCTAATAAATGTCCTATCTGTCGTCAACCGATTGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCATGTAAAGTGGCTGTTTAGACCAGAAGCCCCTCAATGTGACCTTTATAAGAACATATGGGTTGGATTTAGAAGTGCACGGGTCTATGACCTACGTGGGTTTGAAGAGCTACATGGATTCTATGTAATATTGAACTTCCCTCGAGGAGGTACAATCAAGGAGTCAGGAGGGGGAGACATCTATTTAGCTTTACCCACAAATCAGTCTTGTCGGGACCTCATCATTCACAGAAACGACACCGTTTCACTCCAAGTCGGCGAAGTCAGCCAAGTCAAGCCAAAACACCATGAAAAAAAAAGCCAAATTGTCAAGTCGAGTCGGCTCGGCTCGAAATGTGTTTTGAAGGTGAACATTCACTGTGATGGATGTAAGCACAAGGTGAAGAAAATCTTGCAGAAAATCGATGGTGTTTTCACCACCGAGATAGATGCAGAACAGGGGAAGGTTACAGTGACCGGGAACGTAGATGCCGCCGTACTCATCAAGAAGCTGTCAAAATCCGGCAAACATGCAGAGATTTGGGGCAGCCAACCGGCAAACAACAACAAAAATCAGCAAAACAACATAGCTAATCAGATGAAGAACATGCAAATTGATAATGCGAAAGGTGGGAACAACAACAAGGGCCAGAACCAGAAGGGCGGCGCTGCAGGCGGCGGCGGTGGTGGTGGCAATGGAAATAACCTGCCTAAAGGTGGACAAGGGCAAGGGTTGCCACCGTCACAGCTTCAGCAGCTACAAGCAATGAAAGGGTTTCAAGATCTGAAGCTCCCACCTCAATTTAAAGGCTTGAAATTGCCCGTTAAAGATCAGAACCCGAATCTTCCCAAGGCTGGGAAGTTCAATTTGCACGAGGGTGATGATCTGAGCGATGAGGATGATCTTGATGACTATGATGATGAAGATGATTATGACGATGACGATGAGTTTGATGATGATTTAGGTAATCTTCACCTCCCTCCGGCGAATAAGATGAAACCCATGATGGGGAATGCACAGATGCCGAAAATGATGATGAGCGGCAATCATCCGCCGGTGATGAATGGCCCTGCCGGCGGTGGAAATGGCGGAGGTAACGGAAAGAAAGGCGGTGGAGCGGTGCCGGTTCAGGGGAATAACAATGCAAAGAATGGAAACGGCGGAGGAGGTAAAGGGAATGGCGGTGGAGGTGGAGGTGGAGGTGGAGGTGGTAGCAACCAAAAACAGAGCGGCGGAGGAGGTGGAGGAAAGAACAACAGTGGCGGCGGTGGCGGTGGTGGAGGCAATAACAAAACTGGCCATGCCGGTGGGAATGGGAGTAATAATGGGATGAACGGCGTTCAAAAGGCAGTCGGTGGGGCAAACGGAATGGGCCATGATTTACAGAGCTTGGTCGGAGCTCATGGATTGGGAATGTCCAATTTGGGTCAAATGGGTGACCGGCCGATGAGCCAAATGGGCAATCTTCCGGCGGTACAAGGCCTTCCCGCCCCAGCGCCAACCATGAACGGCAACGGCGGCGGTGGTGGCGGCGGTAGGTTTTCGCCGGAGGGCATGGCGGGGAACCCTTACCAACAGCACCCACAGCAGCAGTACATGGCGCAAATGATGAACCAACAACAACACCACGCGCTTGGGCACCAACCGATGATGTACGCGCGGCCACCGCCAGCCGTAAATTACGTGCCGCCGCCGTACCCATACCCATATCCACCACCGTACCACAACCCATATCCCCCAACGCAGCCAGAACCCTACACATATTTTAGCGACGAGAACCCCTCAAGTTGTAACATCATGTGA 2958 49.29 MGISWSNRRRNNYLQNPPPPPPPPYLSSSSFYYPSEPQSLSPTPPPPLQTHQFTNSHPPPPHSHPYGPTSQPPPLPPIPHPPAPAPAPHPYYFSGGYNSCNYGNSSMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPSLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDHHLVSFVFDALYDGSVTILFFAKEEPNCRFVPVYPDAFKPVKIPFQKGPAQKFFQPVGTGFDLGFFELEDLSKPSPGEDIFPLVISAETCSPSQSDEEQIGEPQRDNSHMQITQAVLEKKNGGLFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELIEIKINNSDHVKWLFRPEAPQCDLYKNIWVGFRSARVYDLRGFEELHGFYVILNFPRGGTIKESGGGDIYLALPTNQSCRDLIIHRNDTVSLQVGEVSQVKPKHHEKKSQIVKSSRLGSKCVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVTGNVDAAVLIKKLSKSGKHAEIWGSQPANNNKNQQNNIANQMKNMQIDNAKGGNNNKGQNQKGGAAGGGGGGGNGNNLPKGGQGQGLPPSQLQQLQAMKGFQDLKLPPQFKGLKLPVKDQNPNLPKAGKFNLHEGDDLSDEDDLDDYDDEDDYDDDDEFDDDLGNLHLPPANKMKPMMGNAQMPKMMMSGNHPPVMNGPAGGGNGGGNGKKGGGAVPVQGNNNAKNGNGGGGKGNGGGGGGGGGGGSNQKQSGGGGGGKNNSGGGGGGGGNNKTGHAGGNGSNNGMNGVQKAVGGANGMGHDLQSLVGAHGLGMSNLGQMGDRPMSQMGNLPAVQGLPAPAPTMNGNGGGGGGGRFSPEGMAGNPYQQHPQQQYMAQMMNQQQHHALGHQPMMYARPPPAVNYVPPPYPYPYPPPYHNPYPPTQPEPYTYFSDENPSSCNIM 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5079973 5090087 - CmPI595203_05g005980.1 Cmu05g0598 415512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0598 985 Gene3D - 499 573 - -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 38 83 - -
Cmu05g0598 985 CDD HMA 505 564 IPR006121 GO:0046872(InterPro)
Cmu05g0598 985 Pfam Heavy-metal-associated domain 506 562 IPR006121 GO:0046872(InterPro)
Cmu05g0598 985 SUPERFAMILY RING/U-box 337 383 - -
Cmu05g0598 985 ProSiteProfiles Zinc finger RING-type profile. 338 377 IPR001841 -
Cmu05g0598 985 ProSiteProfiles Heavy-metal-associated domain profile. 501 564 IPR006121 GO:0046872(InterPro)
Cmu05g0598 985 PANTHER MAHOGUNIN 70 392 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Cmu05g0598 985 MobiDBLite consensus disorder prediction 680 705 - -
Cmu05g0598 985 Pfam Zinc finger, C3HC4 type (RING finger) 336 382 - -
Cmu05g0598 985 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 590 633 - -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 14 28 - -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 1 83 - -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 590 605 - -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 655 840 - -
Cmu05g0598 985 SMART ring_2 338 376 IPR001841 -
Cmu05g0598 985 FunFam probable E3 ubiquitin-protein ligase LOG2 322 387 - -
Cmu05g0598 985 CDD mRING-HC-C3HC5_MGRN1-like 336 377 IPR045195 -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 888 910 - -
Cmu05g0598 985 MobiDBLite consensus disorder prediction 818 833 - -
Cmu05g0598 985 SUPERFAMILY HMA, heavy metal-associated domain 505 567 IPR036163 GO:0046872(InterPro)
Cmu05g0598 985 FunFam Copper transport protein ATOX1 501 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2273 Cmu-Chr3:31444858 Cmu05g0598 Cmu-Chr5:5079973 4.10E-10 dispersed
Cmu03g2295 Cmu-Chr3:31641649 Cmu05g0598 Cmu-Chr5:5079973 1.40E-16 dispersed
Cmu05g0598 Cmu-Chr5:5079973 Cmu05g0667 Cmu-Chr5:5773916 2.00E-20 dispersed
Cmu05g1183 Cmu-Chr5:11718265 Cmu05g0598 Cmu-Chr5:5079973 1.70E-10 transposed
Cmu10g2756 Cmu-Chr10:34184039 Cmu05g0598 Cmu-Chr5:5079973 2.10E-76 transposed
Cmu05g0598 Cmu-Chr5:5079973 Cmu06g0570 Cmu-Chr6:6335540 3.10E-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0598 K27504 - csv:101203938 679.093