Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0635 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGTGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCGTGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAATCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCAGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 45.96 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPRAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPNRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5459149 5462007 + CmPI595203_05g006350.1 Cmu05g0635 415549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0635 387 CDD F-box_AtTLP-like 35 79 - -
Cmu05g0635 387 PANTHER TUBBY-RELATED 25 386 - -
Cmu05g0635 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cmu05g0635 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cmu05g0635 387 Pfam Tub family 96 382 IPR000007 -
Cmu05g0635 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cmu05g0635 387 FunFam Tubby-like F-box protein 92 387 - -
Cmu05g0635 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cmu05g0635 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Cmu05g0635 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0635 Cmu-Chr5:5459149 Cmu05g1098 Cmu-Chr5:10393178 1.60E-119 dispersed
Cmu07g1018 Cmu-Chr7:24918032 Cmu05g0635 Cmu-Chr5:5459149 3.90E-102 transposed
Cmu08g0328 Cmu-Chr8:8854832 Cmu05g0635 Cmu-Chr5:5459149 3.90E-122 transposed
Cmu08g0647 Cmu-Chr8:18687510 Cmu05g0635 Cmu-Chr5:5459149 1.70E-119 transposed
Cmu05g0635 Cmu-Chr5:5459149 Cmu06g0529 Cmu-Chr6:5860565 3.00E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6127 PF01167 Tub 5.30E-110 CL0395 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0635 K19600 - csv:101217713 770.0