Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0635 ATGTCTTTGAAGAGTATAATTCAGGAAATGAGATCCAGGTCCCGCCGCGTGGTTCAGGATGGATCCACGCCCGAAGTCGGTGACGCTTTGGCGCAGAGCTGTTGGGCTTACATGCCTCAGGAGTTGTTGAGAGAGGTTCTGGTTAGAATCGAGAGCTCTGAGAATGCTTGGCCTCTGCGGAAGACCGTAGTGGCCTGCGCTGGAGTTTGCCGGAGTTGGAGACGAATTACTAAGGAGATTGTTAAAACTCCTGAGGTTTCCGCCAGATTGACGTTTCCTATTTCCGTCAAGCAGCCTGGTCCAAGGGATTTGCTTCTTCATTGCTTCATAAAACGGAATCGATCCGCACAAACTTATTGCCTTTACCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCCCGTAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTCTACATGCTGATGACATGTCCAAGGCAAGTGGCACCTTTGTTGGAAAATTAAGATCTAATTTTTTAGGAACAAAGTTCACAATCTTTGATGGACAGCCACCTCGTGCAGGAGCCAAGATTTCAAAAAGTCGTTCCTCTAGGCTTGTGGGCCTGAAACAAGTGTCACCTAGAGTTCCTGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGTCCAAGGAGAATGCATTGTGTAATGGATGCTATTCCTGCCTCTGCTATTGAGCCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCGCCAAATCGTATAGACTTTCTTCCATCATTGAGATTTTCCTGGTCAAAATCGAATCACACAGACAATCAACCATCAGGATCTTCAACTGATCAGAAAGATGGAGTTCTAGTGCTTAGGAACAAGGCTCCTCGGTGGCACGAACAGCTCCAATGTTGGTGTTTGAACTTCCATGGGCGAGTGACAATTGCTTCAGTAAAAAACTTTCAGTTAGTAGCTTCACCTGAAAATGGGCTTGCCGGACCTGAACACGAGAAGATCATTCTTCAATTTGGAAAAGTGGGAAAGGATATATTTACAATGGACTACAGATATCCAATCTCAGCGTTTCAAGCTTTTGCCATCTGCCTCAGTAGCTTTGACACAAAGATCGCTTGTGAATGA 1164 45.96 MSLKSIIQEMRSRSRRVVQDGSTPEVGDALAQSCWAYMPQELLREVLVRIESSENAWPLRKTVVACAGVCRSWRRITKEIVKTPEVSARLTFPISVKQPGPRDLLLHCFIKRNRSAQTYCLYLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKASGTFVGKLRSNFLGTKFTIFDGQPPRAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPASAIEPGGVAPIQTEFSPNRIDFLPSLRFSWSKSNHTDNQPSGSSTDQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGLAGPEHEKIILQFGKVGKDIFTMDYRYPISAFQAFAICLSSFDTKIACE 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5459149 5462007 + CmPI595203_05g006350.1 Cmu05g0635 415549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0635 387 CDD F-box_AtTLP-like 35 79 - -
Cmu05g0635 387 PANTHER TUBBY-RELATED 25 386 - -
Cmu05g0635 387 ProSitePatterns Tub family signature 1. 317 330 IPR018066 -
Cmu05g0635 387 SUPERFAMILY Tubby C-terminal domain-like 84 387 IPR025659 -
Cmu05g0635 387 Pfam Tub family 96 382 IPR000007 -
Cmu05g0635 387 ProSitePatterns Tub family signature 2. 372 387 IPR018066 -
Cmu05g0635 387 FunFam Tubby-like F-box protein 92 387 - -
Cmu05g0635 387 Gene3D Tubby Protein; Chain A 92 387 IPR025659 -
Cmu05g0635 387 SUPERFAMILY F-box domain 28 78 IPR036047 GO:0005515(InterPro)
Cmu05g0635 387 PRINTS Tubby superfamily signature 344 363 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 317 333 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 365 387 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 299 316 IPR000007 -
Cmu05g0635 387 PRINTS Tubby superfamily signature 215 242 IPR000007 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0635 K19600 - - csv:101217713 770.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0635 Cmu-Chr5:5459149 Cmu05g1098 Cmu-Chr5:10393178 1.60E-119 dispersed
Cmu07g1018 Cmu-Chr7:24918032 Cmu05g0635 Cmu-Chr5:5459149 3.90E-102 transposed
Cmu08g0328 Cmu-Chr8:8854832 Cmu05g0635 Cmu-Chr5:5459149 3.90E-122 transposed
Cmu08g0647 Cmu-Chr8:18687510 Cmu05g0635 Cmu-Chr5:5459149 1.70E-119 transposed
Cmu05g0635 Cmu-Chr5:5459149 Cmu06g0529 Cmu-Chr6:5860565 3.00E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g364 . . . Bda08g00279 . . . . Cmo08g01177 Cmo17g00296 Cma06g01463 Cma14g01645 Car06g01262 Car14g01476 Sed02g1224 . Cpe03g01389 Bhi01g00948 Tan10g0947 Cmetu07g1074 Lac12g2379 Hepe05g1485 . Lcy11g1455 Cla06g00505 Cam06g0544 Cec06g0545 Cco06g0552 Clacu06g0531 Cmu06g0529 Cre06g1299 Cone14ag0786 . Cone7ag0180 Cone4ag0175 Lsi05g01499 . Chy11g01469 Cme06g00687 . . . . . . . . . . Cmo14g01689 Cma08g01203 Cma17g00306 Car08g01080 . Cpe12g00258 Cpe17g00002 Bhi12g01742 . . . . . . Cla05g00612 Cam05g0673 Cec05g0683 Cco05g0677 Clacu05g0667 Cmu05g0635 Cre05g0707 Lsi09g01396 Csa03g01411 Chy06g00654 Cme11g01977
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0328 . 1 431 TUB Transcription Factor Family AT1G76900 72.7 6.9e-178 620.5
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 2.6e-169 592.0
Cmu08g0647 . 6 406 TUB Transcription Factor Family AT1G76900 65.9 1.0e-157 553.5
Cmu05g0635 . 13 387 TUB Transcription Factor Family AT1G76900 50.7 3.3e-111 399.1
Cmu05g1098 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.1e-102 367.1
Cmu08g0328 . 173 431 TUB Transcription Factor Family AT1G25280 67.7 4.8e-94 341.3
Cmu08g0647 . 149 406 TUB Transcription Factor Family AT1G25280 70.0 2.0e-92 335.9
Cmu05g0635 . 154 387 TUB Transcription Factor Family AT1G25280 53.6 4.8e-70 261.5
Cmu05g1935 . 309 536 TUB Transcription Factor Family AT1G25280 53.8 1.4e-66 250.0
Cmu01g1898 . 176 413 TUB Transcription Factor Family AT1G25280 51.3 1.1e-63 240.4
Cmu06g0529 . 154 362 TUB Transcription Factor Family AT1G25280 50.2 2.4e-53 206.1
Cmu05g0635 . 98 387 TUB Transcription Factor Family AT5G18680 62.4 1.5e-96 349.7
Cmu06g0529 . 98 362 TUB Transcription Factor Family AT5G18680 61.0 1.4e-86 316.6
Cmu08g0328 . 112 431 TUB Transcription Factor Family AT5G18680 52.8 3.8e-84 308.5
Cmu08g0647 . 86 406 TUB Transcription Factor Family AT5G18680 51.2 1.9e-83 306.2
Cmu05g1098 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 9.4e-83 303.9
Cmu05g1935 . 245 536 TUB Transcription Factor Family AT5G18680 51.9 3.4e-77 285.4
Cmu01g1898 . 1 413 TUB Transcription Factor Family AT2G18280 61.0 3.6e-138 488.4
Cmu05g1935 . 131 536 TUB Transcription Factor Family AT2G18280 59.0 4.5e-125 444.9
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT2G18280 52.9 3.7e-119 425.2
Cmu08g0328 . 1 431 TUB Transcription Factor Family AT2G18280 52.0 2.2e-116 416.0
Cmu05g0635 . 1 387 TUB Transcription Factor Family AT2G18280 53.8 8.5e-116 414.1
Cmu08g0647 . 7 406 TUB Transcription Factor Family AT2G18280 50.7 3.7e-111 398.7
Cmu06g0529 . 1 362 TUB Transcription Factor Family AT2G18280 51.3 6.6e-100 361.3
Cmu05g0635 . 1 387 TUB Transcription Factor Family AT2G47900 68.7 1.5e-160 562.8
Cmu06g0529 . 1 362 TUB Transcription Factor Family AT2G47900 67.3 2.1e-146 515.8
Cmu08g0328 . 1 431 TUB Transcription Factor Family AT2G47900 55.3 1.0e-132 470.3
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 9.7e-131 463.8
Cmu08g0647 . 9 406 TUB Transcription Factor Family AT2G47900 57.8 6.1e-125 444.5
Cmu05g1935 . 140 536 TUB Transcription Factor Family AT2G47900 55.4 4.7e-117 418.3
Cmu01g1898 . 1 413 TUB Transcription Factor Family AT2G47900 53.4 6.3e-114 407.9
Cmu07g1018 . 53 383 TUB Transcription Factor Family AT2G47900 52.1 2.3e-100 362.8
Cmu09g0329 . 82 297 TUB Transcription Factor Family AT1G16070 61.8 3.0e-73 272.3
Cmu08g0328 . 67 431 TUB Transcription Factor Family AT1G43640 70.2 1.3e-147 519.6
Cmu05g1098 . 66 428 TUB Transcription Factor Family AT1G43640 68.0 1.1e-146 516.5
Cmu08g0647 . 39 406 TUB Transcription Factor Family AT1G43640 65.8 3.2e-141 498.4
Cmu05g0635 . 49 387 TUB Transcription Factor Family AT1G43640 53.4 2.8e-105 379.0
Cmu05g1935 . 198 536 TUB Transcription Factor Family AT1G43640 50.1 2.3e-99 359.4
Cmu06g0529 . 49 362 TUB Transcription Factor Family AT1G43640 50.7 2.5e-93 339.3
Cmu05g1935 . 164 536 TUB Transcription Factor Family AT1G47270 64.4 1.1e-134 476.9
Cmu01g1898 . 33 413 TUB Transcription Factor Family AT1G47270 56.7 3.0e-121 432.2
Cmu05g1098 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.2e-114 410.2
Cmu08g0328 . 30 431 TUB Transcription Factor Family AT1G47270 51.6 1.9e-112 402.9
Cmu08g0647 . 25 406 TUB Transcription Factor Family AT1G47270 55.5 7.4e-112 401.0
Cmu05g0635 . 1 387 TUB Transcription Factor Family AT1G47270 50.5 2.5e-104 375.9
Cmu07g1018 . 50 383 TUB Transcription Factor Family AT1G53320 76.8 9.3e-152 533.5
Cmu05g0635 . 98 387 TUB Transcription Factor Family AT3G06380 63.8 5.0e-97 351.3
Cmu05g1098 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 4.5e-82 301.6
Cmu06g0529 . 98 362 TUB Transcription Factor Family AT3G06380 60.2 4.5e-82 301.6
Cmu08g0647 . 90 406 TUB Transcription Factor Family AT3G06380 52.1 6.5e-81 297.7
Cmu08g0328 . 116 431 TUB Transcription Factor Family AT3G06380 50.3 4.2e-80 295.0
Cmu05g1935 . 249 536 TUB Transcription Factor Family AT3G06380 52.9 3.6e-79 292.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002294 1 2 1 1 2 2 3 2 2 2 2 2 4 1 2 4 2 3 3 2 2 2 2 2 2 2 2 3 2 1 63
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6127 PF01167 Tub 5.30E-110 CL0395 Cmu TF