Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0636 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGAGAATCCCGTCCAGAAAGAAGAGGAGGAGGAGAGACAGAAGGCGGAGGAGGAAATTAGGGTTTCTGTCAAACCGGAGGTTTCTCAGGTTCAGGCTAATAATGCTCGCAATGGTGGAAGTAGGAAGGAGGTTGAAAATGACAGAGGTTCGAGGCAGAGAAGTGAGCGGCGGCGAAGGCCGAATCCGAGATCGAGTAATCCGCCGAAACATGTGCATGGCGAGCAAGTCGCCGCTGGATGGCCTTCTTGGCTTTCCGCCGTCGCCGGTGAGGCTATCAACGGATGGATTCCACGCCGTGCCGACTCTTTCGAGAAGCTTGATAAAATTGGGCAAGGGACATATAGTAATGTGTACAAAGCAAGGGACACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCTGAGAGTGTGAGATTTATGGCCCGAGAAATTCTCATCCTGCGACGTCTGGATCATCCCAATGTTGTAAAACTCGAAGGTTTAGTGACGTCCCGGATGTCTTGTAGTTTATATCTTGTATTTGAATACATGGAGCACGATTTGGCTGGACTTGCTGCGAGCCCCGGGATCAAGTTTACAGAACCACAGGTTAAATGCTACATGCACCAATTGTTATCAGGGCTCGAACACTGTCATAATCGTCATGTCCTGCATCGAGATATAAAGGGATCGAATCTTCTGATTGGTAACGATGGGATCCTTAAGATAGCTGATTTTGGATTGGCTTCTGTCTTTGATCCCAACCACAAGCAGCCAATGACAAGTAGGGTGGTTACTCTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCTACTGATTATGGCGTTGGTGTAGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGCTGTTAGCCGGAAAACCTATCATGCCCGGTCGCACAGAGGTTGAGCAGCTGCATAAGATATTTAAGTTATGTGGCTCTCCTACAGACGAATACTGGAAAAAGTCAAGGTTGCCTCATGCAACCATATTCAAGCCTCAACATTCATACAAGAGATGCATAGCAGAGACATTTAAAGATTTCCCACCATCGTCTCTGCCACTAATTGAGACACTTCTTGCAATCGACCCAGCTGAACGCCTGACCGCCACCGCTGCATTACATAGTGAATTTTTCACTACCAAACCATATGCTTGTGAACCTTCCAGCCTCCCTAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTCCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCAGAAGCAATGTAGATGGGGTGAAAAAATCACGGGCACGTGATAGAGCTGTTCGTGCAATTCCTGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGACGTCTCATAACACACGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCTCCACATCAAGATGGAGCACTTGGCTACCCGCTCGGATCTTCGCATCATATTGATCCAATCTACGATCCTCCTGACGTTCCATTTAGCACAATGAATTTCTCGTATCCAAAAGCAAACATTCACACATGGTCTGGTCCTTTGATGGATCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACAGCAGGCGACGGGCATTCATCAAAATCATCTAAAGACTTACGAAAAGATAAAAATTCAGTTCGGATCTAA 1716 47.03 MGCVFGREVSENPVQKEEEEERQKAEEEIRVSVKPEVSQVQANNARNGGSRKEVENDRGSRQRSERRRRPNPRSSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADSFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIGNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSRLPHATIFKPQHSYKRCIAETFKDFPPSSLPLIETLLAIDPAERLTATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNVDGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHIDPIYDPPDVPFSTMNFSYPKANIHTWSGPLMDPAAVGAPRRKKHTAGDGHSSKSSKDLRKDKNSVRI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5465101 5468914 - CmPI595203_05g006360.1 Cmu05g0636 415550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0636 571 MobiDBLite consensus disorder prediction 532 571 - -
Cmu05g0636 571 MobiDBLite consensus disorder prediction 50 72 - -
Cmu05g0636 571 SMART serkin_6 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0636 571 MobiDBLite consensus disorder prediction 541 571 - -
Cmu05g0636 571 MobiDBLite consensus disorder prediction 11 33 - -
Cmu05g0636 571 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0636 571 Gene3D Phosphorylase Kinase; domain 1 100 195 - -
Cmu05g0636 571 PANTHER CELL DIVISION PROTEIN KINASE 112 397 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cmu05g0636 571 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu05g0636 571 SUPERFAMILY Protein kinase-like (PK-like) 106 402 IPR011009 -
Cmu05g0636 571 FunFam probable serine/threonine-protein kinase At1g54610 196 437 - -
Cmu05g0636 571 ProSitePatterns Protein kinases ATP-binding region signature. 119 142 IPR017441 GO:0005524(InterPro)
Cmu05g0636 571 MobiDBLite consensus disorder prediction 1 85 - -
Cmu05g0636 571 FunFam probable serine/threonine-protein kinase At1g54610 100 195 - -
Cmu05g0636 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu05g0636 571 Gene3D Transferase(Phosphotransferase) domain 1 196 436 - -
Cmu05g0636 571 CDD STKc_CDK9_like 113 397 - -
Cmu05g0636 571 MobiDBLite consensus disorder prediction 477 498 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1621 Cmu-Chr2:30018491 Cmu05g0636 Cmu-Chr5:5465101 1.10E-225 dispersed
Cmu03g0999 Cmu-Chr3:4593933 Cmu05g0636 Cmu-Chr5:5465101 2.90E-203 dispersed
Cmu04g1243 Cmu-Chr4:26924112 Cmu05g0636 Cmu-Chr5:5465101 5.80E-160 dispersed
Cmu05g0636 Cmu-Chr5:5465101 Cmu05g1044 Cmu-Chr5:9626629 1.40E-183 dispersed
Cmu05g0636 Cmu-Chr5:5465101 Cmu03g2235 Cmu-Chr3:30980116 2.10E-232 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75517 PF00069 Pkinase 2.80E-68 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0636 K08819 - csv:101217952 1082.01