Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0652 ATGGCCGCCATCTCAATTTGCTTCGCTCCACAAGCTCTGGCACGGCCCAGAATTCGGAACCCTAGAAGCATACCATCGCCCAAGAAGCTTCGTGGGAACAATAAGCTCAATCGCAATAACGTCAAGATCAAAACCAATTCGAAGGAGTTGTCTTCCATTGGCGTTGAAGCCACCACTTACACTCGCCTCCCTCCCAGGGAAGACTTCGCTCTTCTTAACTTTGATTCTCCGTCTTTTAATTCTGCTTCTTCTTCGAAGGATTCGTCTGAGGTGAAGCTTTTGGATTCGGATGTTGCCATAATTGAGGAGGAAGATGATTTGGATTCTTTGAACTGTGAAGAGCGGGAGGAAGAAGGGGAGGGAGGATTGGATGGTAATTTGGGGTTTGGGAATGGTTATGGGAAGTTTGAAGTGTTTGAGGGGGAATATGATTCTGAAATGGAGGAGTATGGTGATAGTGATGTGGAAGAGGAAGATGAAGAAGGAGAGAAGGTTTTGGCATTTAGGAAGGGGAAATTTGTTAATACTGATGAAGCTTACGACACTGGCGAAGAGGCAAGTTCTTTCCTCGACGTTGAAGATGGGAAGGAGAAGGGGCTGCCAGCCGTAATGCGGTGCTTTGATCGAGCGAAAATCTACGTTAAAGCTGGAGATGGTGGTAATGGAGTTGTGGCATTTCGGCGAGAGAAGTATGTGCCGATGGGTGGCCCATCGGGAGGAGATGGAGGGAGAGGTGGGAATGTGTATGTTGAAGTTGATGAGTCGATGAATTCGCTATTGCCATTTCGAAATGGCATACATTTTCGTGCTGGAAGGGGTAGTCATGGGCAGGGGAGAATGCAAAACGGGGCAAAGGGTGAGGATGTAGTTGTGAAGGTGGCACCAGGAACAGTGATCAGAGACGCATTTAGCCAGGAGGTACTTTTGGAATTATTGCATCCGGGGCAGCGTGCTCTATTGCTGCGCGGTGGAAGGGGTGGAAGAGGCAATGCATCATTCAAGTCAGGGACAAATAAGGTTCCAAAGATTTCAGAAAATGGAGAAGAGGGTTCAGAAATGTGGTTGGAGCTGGAGCTAAAGCTTGTTGCAGATGTTGGAATCGTGGGGGCACCAAATGCAGGGAAAAGCACACTTTTGAGCGTGATAAGTGCTGCACAGCCAGCCATAGCAAATTACCCTTTTACCACTCTACTCCCCAACTTAGGTGTAGTTTCTTTTGATTATGATTCAACTATGGTGGTAGCAGATCTTCCAGGATTACTTGAAGGGGCACATGAGGGCTTTGGTTTAGGCCATGAATTTCTACGTCACACCGAGAGGTGTTCTGCGCTGGTGCATGTGGTTGATGGATCAGGACCACAACCTGAATATGAATTTGATGCTGTTCGTTTGGAGTTGGAGCTCTTCAGCCCTGAACTAGCTGAAAAGCCCTATCTTGTTGCATATAATAAAATGGATCTTCCTGAAGCGTATGAAAACTGGCCAGCATTCAAGGAAAAGCTACAAGCTCGCGGGATTGAACCTTTTTGCATGAGTGCAGTAAAACAAGAGGGCACTCATGAAGTCATTAGTGCTGCATATCAGCTGCTAATGGAGAATAAAGAAGCCAGCAAGGAATTTCAAGGTGGGAAAATACCACAGAATCTGGACCATGTGGCAGATAGAATACACAAGCAGCGTAGTGCTTCTATTGATGACTATGAAATTATTCACGATAGCGGGTCCAATGTATGGCATGTAGTAGGATCTGGTCTACAACGTTTTGTTCAGATGACAAATTGGCGTTACATGGAATCTGAAAGAAGGTTCCAACATGTAATGGAGGCTTGTGGTGTCAACAAGTCTCTCAGAAAACTTGGCGTCAAGGAGGGTGACACGGTATTTGTTGCAGAGATGGAGATGATCTGGCATGACTCACCAAATAGTTCTGGTCCATCTAATATGAAGAAAAGATCAGATTCTGTGAAATGGCCAGAGTGGAACAAATTTATACTGGTGCTGTCTGTATTTCTATGGCATATTACAAATGTCTTTAAAATGCCATTACGACGGTTGAAAAGCTTTGACGTTCATTCCCTTTGGTCAATGGTGGGAAGAATGGATTTTCTTAATGGATCAGATGAAGAGCCTTACACATCCTGGAGATCCGAATGA 2154 45.54 MAAISICFAPQALARPRIRNPRSIPSPKKLRGNNKLNRNNVKIKTNSKELSSIGVEATTYTRLPPREDFALLNFDSPSFNSASSSKDSSEVKLLDSDVAIIEEEDDLDSLNCEEREEEGEGGLDGNLGFGNGYGKFEVFEGEYDSEMEEYGDSDVEEEDEEGEKVLAFRKGKFVNTDEAYDTGEEASSFLDVEDGKEKGLPAVMRCFDRAKIYVKAGDGGNGVVAFRREKYVPMGGPSGGDGGRGGNVYVEVDESMNSLLPFRNGIHFRAGRGSHGQGRMQNGAKGEDVVVKVAPGTVIRDAFSQEVLLELLHPGQRALLLRGGRGGRGNASFKSGTNKVPKISENGEEGSEMWLELELKLVADVGIVGAPNAGKSTLLSVISAAQPAIANYPFTTLLPNLGVVSFDYDSTMVVADLPGLLEGAHEGFGLGHEFLRHTERCSALVHVVDGSGPQPEYEFDAVRLELELFSPELAEKPYLVAYNKMDLPEAYENWPAFKEKLQARGIEPFCMSAVKQEGTHEVISAAYQLLMENKEASKEFQGGKIPQNLDHVADRIHKQRSASIDDYEIIHDSGSNVWHVVGSGLQRFVQMTNWRYMESERRFQHVMEACGVNKSLRKLGVKEGDTVFVAEMEMIWHDSPNSSGPSNMKKRSDSVKWPEWNKFILVLSVFLWHITNVFKMPLRRLKSFDVHSLWSMVGRMDFLNGSDEEPYTSWRSE 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5600048 5606879 + CmPI595203_05g006520.1 Cmu05g0652 415566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0652 717 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 363 531 IPR031167 GO:0005525(InterPro)
Cmu05g0652 717 SUPERFAMILY Obg GTP-binding protein C-terminal domain 566 638 IPR036346 -
Cmu05g0652 717 ProSiteProfiles Obg domain profile. 204 362 IPR006169 -
Cmu05g0652 717 Pfam GTP1/OBG 208 361 IPR006169 -
Cmu05g0652 717 MobiDBLite consensus disorder prediction 17 40 - -
Cmu05g0652 717 Pfam Domain of unknown function (DUF1967) 568 636 IPR015349 GO:0000166(InterPro)
Cmu05g0652 717 Coils Coil 100 120 - -
Cmu05g0652 717 ProSitePatterns GTP1/OBG family signature. 416 429 IPR006074 GO:0005525(InterPro)
Cmu05g0652 717 CDD Obg 363 530 IPR031167 GO:0005525(InterPro)
Cmu05g0652 717 ProSiteProfiles Obg C-terminal (OCT) domain profile. 559 638 IPR015349 GO:0000166(InterPro)
Cmu05g0652 717 Gene3D - 568 639 IPR036346 -
Cmu05g0652 717 FunFam GTPase Obg 204 361 - -
Cmu05g0652 717 Gene3D - 362 541 IPR027417 -
Cmu05g0652 717 Gene3D GTP1/OBG domain 202 361 IPR036726 -
Cmu05g0652 717 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 193 539 IPR045086 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005739(PANTHER)
Cmu05g0652 717 FunFam GTPase Obg 362 541 - -
Cmu05g0652 717 NCBIfam Obg family GTPase CgtA 207 529 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g0652 717 NCBIfam Obg family GTPase CgtA C-terminal domain 570 636 IPR015349 GO:0000166(InterPro)
Cmu05g0652 717 PRINTS GTP1/OBG GTP-binding protein family signature 365 385 IPR006073 GO:0005525(InterPro)
Cmu05g0652 717 PRINTS GTP1/OBG GTP-binding protein family signature 431 449 IPR006073 GO:0005525(InterPro)
Cmu05g0652 717 PRINTS GTP1/OBG GTP-binding protein family signature 386 404 IPR006073 GO:0005525(InterPro)
Cmu05g0652 717 PRINTS GTP1/OBG GTP-binding protein family signature 414 429 IPR006073 GO:0005525(InterPro)
Cmu05g0652 717 SUPERFAMILY Obg GTP-binding protein N-terminal domain 207 361 IPR036726 -
Cmu05g0652 717 Hamap GTPase Obg [obg]. 205 531 IPR014100 GO:0000287(InterPro)|GO:0003924(InterPro)|GO:0005525(InterPro)
Cmu05g0652 717 Pfam 50S ribosome-binding GTPase 364 484 IPR006073 GO:0005525(InterPro)
Cmu05g0652 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 534 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0652 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0652 Cmu-Chr5:5600048 Cmu05g1913 Cmu-Chr5:29025290 4.90E-53 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g339 . . . . . Bpe14g01139 . . . . Cma06g01481 . Car06g01274 . Sed02g1212 Cpe08g00202 . Bhi01g00970 Tan10g0975 Cmetu10g1427 . Hepe05g1468 . Lcy11g1435 . . . . . . . . . Cone7ag0164 Cone4ag0160 Lsi05g01519 . . Cme06g00707 Blo02g00518 . . Bda13g00170 . . . . . Cmo06g01477 . . . . . . . . . . . . . . Cla05g00630 Cam05g0690 Cec05g0699 Cco05g0696 Clacu05g0684 Cmu05g0652 Cre05g0723 . Csa03g01431 Chy06g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009907 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33