Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu05g0654 | ATGAAGCCGTACGGTCACTCTCTTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCACGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCGGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCGGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAATTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGTACTTGA | 1443 | 49.83 | MKPYGHSLEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRT | 480 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 5625746 | 5629196 | - | CmPI595203_05g006540.1 | Cmu05g0654 | 415568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu05g0654 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 138 | 166 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SUPERFAMILY | CCCH zinc finger | 352 | 379 | IPR036855 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | Gene3D | - | 90 | 171 | - | - | |
| Cmu05g0654 | 480 | Gene3D | - | 291 | 338 | - | - | |
| Cmu05g0654 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 46 | 74 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
| Cmu05g0654 | 480 | MobiDBLite | consensus disorder prediction | 403 | 480 | - | - | |
| Cmu05g0654 | 480 | SMART | c3hfinal6 | 46 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SMART | c3hfinal6 | 92 | 119 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SMART | c3hfinal6 | 348 | 375 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SMART | c3hfinal6 | 138 | 165 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SMART | c3hfinal6 | 302 | 329 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | MobiDBLite | consensus disorder prediction | 278 | 305 | - | - | |
| Cmu05g0654 | 480 | MobiDBLite | consensus disorder prediction | 278 | 299 | - | - | |
| Cmu05g0654 | 480 | MobiDBLite | consensus disorder prediction | 424 | 480 | - | - | |
| Cmu05g0654 | 480 | FunFam | CCCH type zinc finger protein | 300 | 385 | - | - | |
| Cmu05g0654 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 348 | 376 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SUPERFAMILY | CCCH zinc finger | 140 | 166 | IPR036855 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 92 | 120 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | Gene3D | - | 37 | 89 | - | - | |
| Cmu05g0654 | 480 | Gene3D | - | 347 | 395 | - | - | |
| Cmu05g0654 | 480 | SUPERFAMILY | CCCH zinc finger | 94 | 122 | IPR036855 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | ProSiteProfiles | Zinc finger C3H1-type profile. | 302 | 330 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 350 | 375 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 95 | 118 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 303 | 329 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 48 | 73 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 140 | 165 | IPR000571 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SUPERFAMILY | CCCH zinc finger | 48 | 75 | IPR036855 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | SUPERFAMILY | CCCH zinc finger | 306 | 329 | IPR036855 | GO:0046872(InterPro) | |
| Cmu05g0654 | 480 | PANTHER | PROTEIN PHOSPHATASE RELATED | 38 | 376 | IPR050974 | GO:0003729(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu03g1643 | Cmu-Chr3:19387669 | Cmu05g0654 | Cmu-Chr5:5625746 | 4.60E-22 | dispersed | |
| Cmu05g0654 | Cmu-Chr5:5625746 | Cmu09g2182 | Cmu-Chr9:37965360 | 2.70E-07 | dispersed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 6130 | PF00642 | zf-CCCH | 1.30E-07 | CL0537 | Cmu | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu05g0654 | - | - | - | 0.0 |