Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu05g0654 ATGAAGCCGTACGGTCACTCTCTTGAAGGTTCTCACTCCGATCCGTCACCTGAATGGACCGCTTCCGGACCTGATACACCCCACGGAGACTCGCTTTGGCCTTTGGGATCCAGGGAAAGGGAATCCTACCCTGAACGTCCTGAAGAGGCTGATTGTATATATTACCTACGTACGGGATTTTGTGGATATGGCTCTCGTTGTAGGTTCAATCATCCCCGTGAGCGTACCGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAGCGAGTAGGGCAGCCTGTGTGTCAGTACTATATGAGGACAGGAATGTGCAAATTTGGTGCTTCCTGTAAGTATCACCATCCTCTGCAGGAAAGAGGTTCTCTCAGCCCCGTGTCGCTGAATTTCTATGGCTATCCACTACGGCCGGGTGAAAAGGAGTGTTCTTATTATTTGAAGAATGGGCAGTGCAAGTTTGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAGTTTCCAGCACCATCACCTGTTCAGGTTACACCAATGCCACCTCCGGTGCCTACGCCCTCTGTTTATCCTCCTTTGCAGTCTCCATCTGCTCATTCGTCACAACAATATGGAGTAATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTTCCTGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGATCAGGGCCACTTTATGGTATGGCACATGTTTCGCCTTCGGCATCTGGGTTTGCGGGATCTTATCAACCCATGCCATCTGCTGGTCCATCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGGCAACCAGAGTGTCAATATTACATGAGAACGGGGGATTGTAAATTTGGATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTACGTCGAGGCCAAGTGTTGTCCTTAGCCAATTAGGTCTTCCTCTACGTCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTTGGCCCTGCGTGCAAATTTGACCACTCGATGGATCGACTTAGTTACAGTCCATCTGCATCATCTCTTGCTGATATGCCAGTGGCACCCTACCCTGTGGGATCAGTAGCCGGTACTTTAGCCCCATCATCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCTTCATCAATGAGCACCTCTAGTGGATTGGTCGGTTCAACTACATCGAGGACAGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCATCCATGGGCAGTACCTCCAGCACCACCCGTGCAGAGGGTCGTACTTGA 1443 49.83 MKPYGHSLEGSHSDPSPEWTASGPDTPHGDSLWPLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERVGQPVCQYYMRTGMCKFGASCKYHHPLQERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPMPPPVPTPSVYPPLQSPSAHSSQQYGVILARPSLLSSPYVPGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGPLYGMAHVSPSASGFAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSMGSTSSTTRAEGRT 480
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 5625746 5629196 - CmPI595203_05g006540.1 Cmu05g0654 415568
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu05g0654 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872(InterPro)
Cmu05g0654 480 Gene3D - 90 171 - -
Cmu05g0654 480 Gene3D - 291 338 - -
Cmu05g0654 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 MobiDBLite consensus disorder prediction 1 44 - -
Cmu05g0654 480 MobiDBLite consensus disorder prediction 403 480 - -
Cmu05g0654 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 MobiDBLite consensus disorder prediction 278 305 - -
Cmu05g0654 480 MobiDBLite consensus disorder prediction 278 299 - -
Cmu05g0654 480 MobiDBLite consensus disorder prediction 424 480 - -
Cmu05g0654 480 FunFam CCCH type zinc finger protein 300 385 - -
Cmu05g0654 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Cmu05g0654 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 Gene3D - 37 89 - -
Cmu05g0654 480 Gene3D - 347 395 - -
Cmu05g0654 480 SUPERFAMILY CCCH zinc finger 94 122 IPR036855 GO:0046872(InterPro)
Cmu05g0654 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 118 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Cmu05g0654 480 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872(InterPro)
Cmu05g0654 480 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872(InterPro)
Cmu05g0654 480 PANTHER PROTEIN PHOSPHATASE RELATED 38 376 IPR050974 GO:0003729(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1643 Cmu-Chr3:19387669 Cmu05g0654 Cmu-Chr5:5625746 4.60E-22 dispersed
Cmu05g0654 Cmu-Chr5:5625746 Cmu09g2182 Cmu-Chr9:37965360 2.70E-07 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
6130 PF00642 zf-CCCH 1.30E-07 CL0537 Cmu TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu05g0654 - - - 0.0